PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G2376

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 824aa MW: 93729 Da PI: 7.1306

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G2376	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.3	2.2e-09	123	182	17	76
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 ++ + +rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+ek++++++ Gh_A12G2376 123 VQVQPSRGKTRADKDKEVAEFLNKHGINRDAKTAGTKWDNMLGEFRKVYEWEKGEKERVG 182 5567789999*******************************************9866555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	1.93E-17	680	814	IPR011009	Protein kinase-like domain
CDD	cd00180	7.85E-14	680	815	No hit	No description
Gene3D	G3DSA:1.10.510.10	8.1E-9	681	816	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 824 aa Download sequence Send to blast
MGDNTTGDGT RKQTVPQQTQ QHFSASSPIE PLECVNPKKP RYFSSDKWKQ APMAESTQAR 60 VAAGSSSDTY SSPPHSPTII KPEGDQFQHQ LRKGKYVSPV WKPNEMLWLA RAWRIQYLGG 120 VGVQVQPSRG KTRADKDKEV AEFLNKHGIN RDAKTAGTKW DNMLGEFRKV YEWEKGEKER 180 VGKSYFRLSP YERKLHRLPA SFDEEVFEEL VQFMVPRDGR TVGSRALPMP PPVMTTSLLG 240 FDTALDGGLL SLHSSSSSKE LRRIGKIRMT WEESVTLWAE EGEHHRGRVK LQCSSFLNAD 300 ELIFFDDAMV GSTMEAFEDT PLKGFSVDTF VNGQQVKVFG RRKSAQHPFV EPSIRSMPPM 360 EFQDPTDFYM ACLRVPPTTL PSLFELSWHL QEPPPEDYRF PLRRDVYRDL PPGKEVMFTA 420 SSELLDCRAM VYDMLGPMIR TNTSLSAASA TDRDSFIGLW DDCINRVVSK FCSVEMVIIR 480 KPSSPSTDQP LQDRWPNVTG FVKNFCLWRG EETDRSREGQ LDPSSTIVEK LLWSYMDLPY 540 ILGYYAVGYM VTFCALSRSE DRVIMTDLYS VDLSFPSERL KALVPCYRIA GLLPLLADRC 600 LNRVLDMQVP FSDFERINLG NGDIIEMTPN TVTRSFSSKK KWAMVKEIYD MLDQRIPHAE 660 FIYRAAEIDS TLVFKPRGCK FKPLNYDQLV EALKYVTKAL VALHDLSFMH RDLSWDKVLR 720 RCDGENEWFV TGFDEAVGAP QIYPHPVAST EARGTHAPEM VRGLHGVKVD VWGVGHLVKT 780 CGLTNLPKML RELQSRCLDQ NPDQRPTAAD CYHHLLSASS TATY

Sequence ? help Back to Top

Protein Sequence Length: 824 aa Download sequence Send to blast

MGDNTTGDGT RKQTVPQQTQ QHFSASSPIE PLECVNPKKP RYFSSDKWKQ APMAESTQAR  60
VAAGSSSDTY SSPPHSPTII KPEGDQFQHQ LRKGKYVSPV WKPNEMLWLA RAWRIQYLGG  120
VGVQVQPSRG KTRADKDKEV AEFLNKHGIN RDAKTAGTKW DNMLGEFRKV YEWEKGEKER  180
VGKSYFRLSP YERKLHRLPA SFDEEVFEEL VQFMVPRDGR TVGSRALPMP PPVMTTSLLG  240
FDTALDGGLL SLHSSSSSKE LRRIGKIRMT WEESVTLWAE EGEHHRGRVK LQCSSFLNAD  300
ELIFFDDAMV GSTMEAFEDT PLKGFSVDTF VNGQQVKVFG RRKSAQHPFV EPSIRSMPPM  360
EFQDPTDFYM ACLRVPPTTL PSLFELSWHL QEPPPEDYRF PLRRDVYRDL PPGKEVMFTA  420
SSELLDCRAM VYDMLGPMIR TNTSLSAASA TDRDSFIGLW DDCINRVVSK FCSVEMVIIR  480
KPSSPSTDQP LQDRWPNVTG FVKNFCLWRG EETDRSREGQ LDPSSTIVEK LLWSYMDLPY  540
ILGYYAVGYM VTFCALSRSE DRVIMTDLYS VDLSFPSERL KALVPCYRIA GLLPLLADRC  600
LNRVLDMQVP FSDFERINLG NGDIIEMTPN TVTRSFSSKK KWAMVKEIYD MLDQRIPHAE  660
FIYRAAEIDS TLVFKPRGCK FKPLNYDQLV EALKYVTKAL VALHDLSFMH RDLSWDKVLR  720
RCDGENEWFV TGFDEAVGAP QIYPHPVAST EARGTHAPEM VRGLHGVKVD VWGVGHLVKT  780
CGLTNLPKML RELQSRCLDQ NPDQRPTAAD CYHHLLSASS TATY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017636049.1	0.0	PREDICTED: uncharacterized protein LOC108478139
TrEMBL	A0A0D2TE92	0.0	A0A0D2TE92_GOSRA; Uncharacterized protein
STRING	Gorai.008G282200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8356	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	3e-08	Trihelix family protein