PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G2299 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 289aa MW: 31953.3 Da PI: 10.0256 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.8 | 2.2e-12 | 39 | 83 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky Gh_A12G2299 39 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 83 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.69E-16 | 33 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.18 | 34 | 88 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.3E-18 | 37 | 86 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 5.7E-6 | 37 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-10 | 38 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-10 | 39 | 83 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.89E-8 | 41 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MALPGLGPFA ATDAAASTVS SSEDPNKKIR KPYTITKSRE SWTEPEHDKF LEALQLFDRD 60 WKKIEAFVGS KTVIQIRSHA QKYFLKVQKN GTNEHLPPPR PKRKAAHPYP LKASKNVHVQ 120 PQASGSLQSS NALVDTGCVL RSDPSLMLMN PVTAASSWTH NEQTISFSQA KKGSGMANKS 180 RGSSMSTPQR RQIGEMTNQG NHGHALRVLP DFVQVYSFIG SVFDPNTTGH LQKLKKMDPI 240 DIETVLLLMR NLSINLTSPD FEDHRKLLSS YEIDTETIYH GGACKAVGT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.16419 | 0.0 | boll| ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017634602.1 | 0.0 | PREDICTED: protein REVEILLE 6 isoform X1 | ||||
Refseq | XP_017634603.1 | 0.0 | PREDICTED: protein REVEILLE 6 isoform X1 | ||||
Refseq | XP_017634604.1 | 0.0 | PREDICTED: protein REVEILLE 6 isoform X1 | ||||
Refseq | XP_017634605.1 | 0.0 | PREDICTED: protein REVEILLE 6 isoform X1 | ||||
Refseq | XP_017634606.1 | 0.0 | PREDICTED: protein REVEILLE 6 isoform X1 | ||||
Swissprot | Q8H0W3 | 1e-128 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A0B0P468 | 0.0 | A0A0B0P468_GOSAR; Transcription factor ASG4-like protein | ||||
STRING | Gorai.008G274500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1290 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.1 | 1e-114 | MYB_related family protein |
Publications ? help Back to Top | |||
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