PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G2234

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRF

Protein Properties

Length: 496aa MW: 53513.5 Da PI: 7.3966

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G2234	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.3	3.2e-24	158	200	2	44
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrCrRtDGKkWRCsr++ +++k+CErHlhrgr rsrk++e Gh_A12G2234 158 VEPGRCRRTDGKKWRCSRDAAPDQKYCERHLHRGRPRSRKPVE 200 59**************************************987 PP
2	QLQ	27.4	1e-10	102	133	2	33
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 +FT +Q +L +Q++++Ky+ a+ vP +Ll Gh_A12G2234 102 PFTFSQYKELQRQVMIFKYMKASIAVPLDLLI 133 8**************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	0.0036	101	137	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	15.156	102	137	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.6E-7	102	134	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.604	157	201	IPR014977	WRC domain
Pfam	PF08879	2.2E-20	159	200	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MANYDNHHHH RSFPSYVVGY DDVDADDGPT GNNNNNRPKT SNIYDVLASS DCSSGFAATV 60 ASGGAVGVRI LQQPFDISPT STSTAHTAFK SPGGMAASLE FPFTFSQYKE LQRQVMIFKY 120 MKASIAVPLD LLIPTIGSPS VSVASQSAMG RFSGRADVEP GRCRRTDGKK WRCSRDAAPD 180 QKYCERHLHR GRPRSRKPVE LPNKKTRHTP SQAHPSSSSS THPQFVAQPL NQNQTTCFLG 240 QPSQKAAPFW PFTSVSSYKE PRTSDWDMNE LIPLADQQWH HLMQIGTATE GSLFNAVNQS 300 YDKEPLNLIS CPNFSPAEGQ QRNTSPWLLN PEIVPVEKSP PRGFIDAWST AVSDDHHANT 360 GTETSDNGKL TLSSLSLSMG INSFRDNETG PIRMGLGVCG YDQDENHEYA SKCHLSSWLA 420 PASTPGGPLA EVLRPSATAS SPVAGNGNSC SPAMTAVSSP SGVLQKALAS WSDSSGSSSP 480 TIVCSRAKPE IGLMLA

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MANYDNHHHH RSFPSYVVGY DDVDADDGPT GNNNNNRPKT SNIYDVLASS DCSSGFAATV  60
ASGGAVGVRI LQQPFDISPT STSTAHTAFK SPGGMAASLE FPFTFSQYKE LQRQVMIFKY  120
MKASIAVPLD LLIPTIGSPS VSVASQSAMG RFSGRADVEP GRCRRTDGKK WRCSRDAAPD  180
QKYCERHLHR GRPRSRKPVE LPNKKTRHTP SQAHPSSSSS THPQFVAQPL NQNQTTCFLG  240
QPSQKAAPFW PFTSVSSYKE PRTSDWDMNE LIPLADQQWH HLMQIGTATE GSLFNAVNQS  300
YDKEPLNLIS CPNFSPAEGQ QRNTSPWLLN PEIVPVEKSP PRGFIDAWST AVSDDHHANT  360
GTETSDNGKL TLSSLSLSMG INSFRDNETG PIRMGLGVCG YDQDENHEYA SKCHLSSWLA  420
PASTPGGPLA EVLRPSATAS SPVAGNGNSC SPAMTAVSSP SGVLQKALAS WSDSSGSSSP  480
TIVCSRAKPE IGLMLA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9645	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269\|PubMed:20023165}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU735532	0.0	EU735532.1 Gossypium arboreum small heat shock protein gene, promoter region and partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016716407.1	0.0	PREDICTED: growth-regulating factor 7-like
Swissprot	Q9FJB8	2e-31	GRF7_ARATH; Growth-regulating factor 7
TrEMBL	A0A1U8LPC1	0.0	A0A1U8LPC1_GOSHI; growth-regulating factor 7-like
STRING	Gorai.008G265600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12106	27	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	1e-33	growth-regulating factor 7

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]