PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G2200
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 486aa    MW: 52847.8 Da    PI: 9.3581
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G2200genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-182574255
          AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++ GVr+++ +grWvAeI+d      ++ r +lg+f+taeeAa+a++ a+++l+g
  Gh_A12G2200 25 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEEAARAYDDAARALRG 74
                 689******.7*********....4456*************************98 PP
2AP238.13.8e-122512911255
          AP2  12 rgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                   +rWvAeI d      ++   +lg+f+taeeAa+a+++ ++ l+g
  Gh_A12G2200 251 HQRWVAEIDD----SlQKVGLWLGTFDTAEEAARAYDETARILHG 291
                  58******99....4456***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.35E-192582No hitNo description
PfamPF008475.4E-132574IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-282582IPR001471AP2/ERF domain
PROSITE profilePS5103220.5472582IPR001471AP2/ERF domain
SMARTSM003809.1E-362588IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-192682IPR016177DNA-binding domain
PRINTSPR003671.1E-72637IPR001471AP2/ERF domain
PRINTSPR003671.1E-74864IPR001471AP2/ERF domain
PROSITE profilePS5103214.025231299IPR001471AP2/ERF domain
SMARTSM003804.2E-17247305IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-14249300IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-19249299IPR001471AP2/ERF domain
PfamPF008472.0E-6251287IPR001471AP2/ERF domain
CDDcd000183.17E-19253299No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MASGASTGAD ELGRRMKPSS RGHHRFVGVR QRPSGRWVAE IKDSLQKVRL WLGTFDTAEE  60
AARAYDDAAR ALRGSNARAN FELPSPQLAS SSSTNRLIFD NLRPFSSEKA CGSDTGGLLV  120
GALSKLLDAG KGHGVLSAAN SAGLQLSVAS DLPLSNKNLG LESGNMNLVQ GSSKPDLAIN  180
HDQAYDGQST VGQIGVQWHQ LKSQPTSMAS SKWSNEPSFE ALWDSQMTLS PLNGLFNIST  240
SITATSTSRG HQRWVAEIDD SLQKVGLWLG TFDTAEEAAR AYDETARILH GANAHTNFEL  300
PQSASNSSVN RVSFDNIRSQ DLHPESTIAK LSNKRVRGSD DYMNKKKLKA IKKTCRDNAY  360
KYWHIDDGFW SQAIGCGARP RPRVSPSTSN SHCHSDTASC TPYVPTVSQQ GSSTTQQFPE  420
EVQTMKSNVS NIMTQMKQMN QTLCNIQRML EPMMQLQQRS QRQFQFVGGG GSHVGAGGGK  480
ENSPPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1423811271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016716453.10.0PREDICTED: uncharacterized protein LOC107929521
TrEMBLA0A1U8LSR50.0A0A1U8LSR5_GOSHI; uncharacterized protein LOC107929521
STRINGEOY237952e-77(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3566122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-18related to AP2 11