PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G2171
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 325aa    MW: 37421.1 Da    PI: 7.6436
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G2171genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.2e-19123177256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  r++++f++eq++ Le +Fe+++ p    +++LA++lgL+ rq+ +WFqNrRa+ k
  Gh_A12G2171 123 RNKRRFSDEQIRSLEVMFESDSRPESLIKQQLANELGLQPRQIAIWFQNRRARSK 177
                  67889************************************************98 PP
2HD-ZIP_I/II1118.2e-36124215293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +krr+s+eq+++LE +Fe++++ e+  K++la+eLglqprq+a+WFqnrRAR k+kq+E+dy++Lk++ydal+++ e+L+ e+++Lr +l++
  Gh_A12G2171 124 NKRRFSDEQIRSLEVMFESDSRPESLIKQQLANELGLQPRQIAIWFQNRRARSKAKQIERDYNVLKESYDALSSSYESLKLENQSLRIQLQK 215
                  79*************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.68E-18106180IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-18114177IPR009057Homeodomain-like
PROSITE profilePS5007118.236119179IPR001356Homeobox domain
SMARTSM003895.3E-18122183IPR001356Homeobox domain
PfamPF000461.0E-16123177IPR001356Homeobox domain
CDDcd000861.88E-15123180No hitNo description
PRINTSPR000316.2E-5150159IPR000047Helix-turn-helix motif
PROSITE patternPS000270154177IPR017970Homeobox, conserved site
PRINTSPR000316.2E-5159175IPR000047Helix-turn-helix motif
PfamPF021831.0E-16179220IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MANPCRLREK STRVSNRFPI KHQQEVFSPS KPASGQVQAH PSDTLSTTYR HIVSQSYIMF  60
IYTLALLHLS LLHTLCPVII YYTMLANKEQ LHTAAVKMEL GLSGLDHLDM RHHAITNVKS  120
SNRNKRRFSD EQIRSLEVMF ESDSRPESLI KQQLANELGL QPRQIAIWFQ NRRARSKAKQ  180
IERDYNVLKE SYDALSSSYE SLKLENQSLR IQLQKLKGQL EMEHENQQHH GPNRADENSG  240
NAKPENGSTI LDTNKKVTIL LEGYDRLLPC NDNSRNVESE DGDRVALDII KATNGSLTSS  300
EKWCHFESNC FLDESSCSSN WWEYW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171179RRARSKAKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431100.0AC243110.1 Gossypium raimondii clone GR__Ba0028M03-hoi, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439840.10.0PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A0D2TCT90.0A0A0D2TCT9_GOSRA; Uncharacterized protein
STRINGGorai.008G258900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1805779
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-40homeobox 7