PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G2129
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 303aa    MW: 33207.4 Da    PI: 9.3995
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G2129genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-19106156256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr++  +g+WvAeIr p +   r r++lg++ t+e Aa a+++a+ kl+ge
  Gh_A12G2129 106 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYETPETAAYAYDRAAYKLRGE 156
                  59****999.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.17E-22105165No hitNo description
SMARTSM003801.8E-35106169IPR001471AP2/ERF domain
PROSITE profilePS5103223.182106163IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-22106163IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-31106164IPR001471AP2/ERF domain
PfamPF008476.9E-13107156IPR001471AP2/ERF domain
PRINTSPR003678.4E-13107118IPR001471AP2/ERF domain
PRINTSPR003678.4E-13145165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MQEINHPYGF NDGANIGNSV SQLILSGGSN TLDSIFSRCE PSIAAVGTNS VYEPLGSSVY  60
LRQRDLLLKF CQGNASFSRN SVADQLRKSQ NTASTSNCVS PQKTKLYRGV RQRQWGKWVA  120
EIRLPQNRVR VWLGTYETPE TAAYAYDRAA YKLRGEHARL NFPNLKDPAK LGLGDCARLN  180
ALKNAVDAKI QAICQKVKRE RAKKNAKKGN SDRPAASPEA KNDVKVIEPC SSSSSLAFSD  240
NLSNGLLSPP TVSEDGFRRC MNSPSSVSND STMMMAGGPN FEDCSLARMP SFDAELLWEI  300
LAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20105163160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5816260.0JX581626.1 Gossypium hirsutum clone NBRI_GE14296 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016737166.10.0PREDICTED: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W28e-64ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A1U8NDU30.0A0A1U8NDU3_GOSHI; ethylene-responsive transcription factor ERF061
STRINGGorai.008G253900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.18e-66ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]