PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G2121
Common NameWRKY33
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 361aa    MW: 40785.1 Da    PI: 4.8935
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G2121genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY924.5e-29131190258
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                  dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+edp+++eitY+g+H++
  Gh_A12G2121 131 DDGYSWRKYGQKDILGAKYPRSYYRCTYRhtqDCWATKQVQRSDEDPTIFEITYRGTHTC 190
                  8**************************998899*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-28125190IPR003657WRKY domain
PROSITE profilePS5081121.631125188IPR003657WRKY domain
SuperFamilySSF1182902.09E-25129190IPR003657WRKY domain
SMARTSM007741.1E-39130192IPR003657WRKY domain
PfamPF031061.4E-26131190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEHRWNMEQG TLISELIQGM ELAKQLRVHL DTASPTESMD LLVQKILSSY EKALLILQFS  60
RTMSMGQPQQ NVGATSGVPE SPLSINGSPR SDDLDKDNQD TRDVSKKRKM FPRWTDHVRV  120
TSESLLEGTH DDGYSWRKYG QKDILGAKYP RSYYRCTYRH TQDCWATKQV QRSDEDPTIF  180
EITYRGTHTC VNGNQPVPPP ASPEKQEYKL TNLNTNNNQQ LQSQDILSNL RKGLRVNTEG  240
LDNKEMATSF SFPSTSFGWL KTENNSFSPS AVHDNNNILN SFSSPFTSPA TPELNYFSAS  300
QPQMNSFGGM LSTQNSEPDL KELISANTSA TNSEIIDLDF SLDQVELDPN FQFDTQGFFS  360
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-19131190968OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.99530.0ovule| root
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8258750.0KJ825875.1 Gossypium hirsutum WRKY protein 33 (WRKY33) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314459.10.0probable WRKY transcription factor 53
TrEMBLA0A0U1Z9M80.0A0A0U1Z9M8_GOSHI; WRKY protein 33
STRINGGorai.008G253300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.16e-71WRKY family protein