PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G2112
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 343aa    MW: 38369.6 Da    PI: 5.0967
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G2112genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19126176155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  Gh_A12G2112 126 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 176
                  59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.6E-38127190IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-21127184IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-30127184IPR001471AP2/ERF domain
PfamPF008472.1E-12127176IPR001471AP2/ERF domain
PROSITE profilePS5103223.657127184IPR001471AP2/ERF domain
CDDcd000188.51E-32128184No hitNo description
PRINTSPR003673.7E-10128139IPR001471AP2/ERF domain
PRINTSPR003673.7E-10150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDTCPVPSIK YAEHRNETKL FSPLLNVRLE NQSEMKPRIV RITVTDADAT DSSSDEEHQQ  60
KRTRVSSRNR VKKFVKEITI ESSCPTEKNI VERSKTTSSL LKASRKRPAA VAEAKGKAPA  120
KAAAGKKFRG VRQRPWGKWA AEIRDPLRRV RLWLGTYDTA EEAAMVYDNA AIQLRGPDAL  180
TNFATPQQKS IQEKTSQKPL SNSDYNSDEE SHKTDPCSPI SVLRCHSLSV DEADSQSAKE  240
SREIGSEARD VVDDSCCLSG ENLSDFSYYS SLFSGDMFCS VPDFFDDDTS LHESFLKDEF  300
RDGFLSTCGD LEFGFGDFSS FQRVDDHFQD IGDLFGSDPL LAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-21123183162ATERF1
3gcc_A5e-21123183162ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.54410.0ovule| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016737149.10.0PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLA0A1U8NH530.0A0A1U8NH53_GOSHI; ethylene-responsive transcription factor CRF1-like
STRINGGorai.008G252300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.26e-55cytokinin response factor 2