PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G2058

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 227aa MW: 24866.9 Da PI: 5.341

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G2058	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54	4.1e-17	68	115	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+++l+g Gh_A12G2058 68 YRGIRYRS--GKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALKG 115 9**976..*****843...5**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	20.165	67	123	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.1E-26	67	124	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.62E-18	67	125	IPR016177	DNA-binding domain
SMART	SM00380	2.0E-28	67	129	IPR001471	AP2/ERF domain
Pfam	PF00847	3.7E-11	68	115	IPR001471	AP2/ERF domain
CDD	cd00018	5.47E-17	68	125	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MMTDPNNPTD DHRSQPPIPS SFDHPNIQVP HPLLTHTCED PPPTCAKLPP AGKSPMASSS 60 SPGKHPMYRG IRYRSGKWVS EIREPRKTTR IWLGTYPTPE MAAAAYDVAA LALKGSEAVF 120 NFPASVASYR LPVSTSSADI RKAASAAASL KKDEMKSGIN IGTDEYHQAK DREEMSKEEY 180 VDEDALLDLP NLLVDMAQGM LVSPPRIRST PSDESPENSD GESLWSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	8e-14	61	128	1	68	ATERF1
3gcc_A	8e-14	61	128	1	68	ATERF1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.16186	0.0	root\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	109881446	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX586542	4e-69	JX586542.1 Gossypium hirsutum clone NBRI_GE20385 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016724618.1	1e-167	PREDICTED: ethylene-responsive transcription factor ERF027-like
Swissprot	Q9FJ90	1e-51	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A1U8MGA5	1e-166	A0A1U8MGA5_GOSHI; ethylene-responsive transcription factor ERF027-like
STRING	Gorai.008G243700.1	1e-142	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1957	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	7e-45	ERF family protein

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]