PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G2057
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 249aa    MW: 27875.4 Da    PI: 7.5097
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G2057genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.6e-1768118155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + ++GVr++  + +Wv+e+r+p   +k++r++lg++ t+e+Aa+a++ a+++++g
  Gh_A12G2057  68 PVFRGVRRRN-NDKWVCELREP---NKKTRIWLGTYPTPEMAARAHDVAALAFRG 118
                  579****887.8*********8...347************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1268118IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2169128IPR016177DNA-binding domain
PROSITE profilePS5103221.53569126IPR001471AP2/ERF domain
SMARTSM003801.9E-2769132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-3069128IPR001471AP2/ERF domain
PRINTSPR003679.5E-77081IPR001471AP2/ERF domain
CDDcd000182.38E-2870128No hitNo description
PRINTSPR003679.5E-792108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDIPSQTSDV PFSKSNSMRA ERVEPSSSSE GGIGGRRAVH SDEEVLLLAT NRPKKRAGRR  60
VFKETRHPVF RGVRRRNNDK WVCELREPNK KTRIWLGTYP TPEMAARAHD VAALAFRGKA  120
ACLNFADSVW RLPVPASNDA ADIRRAAAEA AEAFRPPVFQ ELSGSDVRQG SFKASDCEVS  180
SSDVKLENKK KMAAEGEVST EKFHFMDEEE MFYVPKLLDS MAEALLLSPP RNRDEVDSDI  240
DVSLWSYSI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.26910.0boll| ovule| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR2332530.0KR233253.1 Gossypium barbadense C-repeat binding factor 4-like protein (CBF4L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016724606.10.0PREDICTED: dehydration-responsive element-binding protein 1E-like
SwissprotQ9LN863e-62DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLA0A1U8MCP10.0A0A1U8MCP1_GOSHI; dehydration-responsive element-binding protein 1E-like
STRINGGorai.008G243600.11e-157(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.12e-59C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]