PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G1978 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 307aa MW: 34167.6 Da PI: 9.5733 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00041 | 207 | 229 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ ++L H r++ Gh_A12G1978 207 HRCELCKKTFRSFYTLDEHKRVC 229 79******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.159 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.82 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.8E-4 | 5 | 27 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.31E-7 | 207 | 272 | No hit | No description |
PROSITE profile | PS50157 | 9.411 | 207 | 234 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 20 | 207 | 227 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.0021 | 207 | 227 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.59 | 250 | 272 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.4E-12 | 250 | 272 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.556 | 250 | 272 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 252 | 272 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MEKQKCKLCA RTFSNGRALG GHMKGHLATH PLPRKTAQHH QLGGRTDSAS SSSYSSGEEQ 60 EEKTKVLEDK CFVYGLRENP MKSFRYADPD FSFAVIASGS VVLDRESETE SRNPTRRRSK 120 RCPKACTNTK TTDGIKKQKL LRKPTLVESP TEPEPVSSVS DTSPEEHIAV CLMMLSRDVW 180 KSKNVEQNSE GNNKVRESSK KKIHGKHRCE LCKKTFRSFY TLDEHKRVCS ETKKTSKVAT 240 TAAGNNSKIF ECPLCYRVFG SGQALGGHKR SHLLAATPNS GKFDNNLIDL NLPAPLEDDD 300 FSVVSDA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 138 | RRRSKRCPKACTNTKTTDGIKKQK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016665389.1 | 0.0 | PREDICTED: zinc finger protein ZAT9 | ||||
TrEMBL | A0A1U8HQ39 | 0.0 | A0A1U8HQ39_GOSHI; zinc finger protein ZAT9 | ||||
STRING | Gorai.008G235100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17350 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-35 | C2H2-like zinc finger protein |