PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A12G1960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 301aa MW: 33809.8 Da PI: 7.5589 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.7 | 1e-18 | 137 | 191 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k Gh_A12G1960 137 RKKLRLSKDQSAILEENFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 191 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 128.4 | 3.1e-41 | 137 | 226 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEe+F+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l Gh_A12G1960 137 RKKLRLSKDQSAILEENFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENQRLQKEVQELR-AL 226 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 1.6E-29 | 1 | 111 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 6.9E-18 | 119 | 190 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.15E-18 | 126 | 194 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.329 | 133 | 193 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-15 | 135 | 197 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.4E-16 | 137 | 191 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.27E-15 | 137 | 194 | No hit | No description |
PRINTS | PR00031 | 2.1E-5 | 164 | 173 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 168 | 191 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.1E-5 | 173 | 189 | IPR000047 | Helix-turn-helix motif |
Gene3D | G3DSA:1.20.5.170 | 5.7E-4 | 191 | 229 | No hit | No description |
SMART | SM00340 | 5.0E-24 | 193 | 237 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.4E-11 | 193 | 227 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 301 aa Download sequence Send to blast |
MAEKEDLGLS LSLSFPQNHH SLQRNLRPSL VPSSANSCSS PSTLTLNKHS WNDSSPPSDH 60 NLESFRAEMG SIFRGIDMNI LPSTADCEEE AGVSSPNSTI SSVSGKRSER EGNGDELEIE 120 KSSSRGISDE EDGDTSRKKL RLSKDQSAIL EENFKEHNTL NPKQKLALAK QLGLRPRQVE 180 VWFQNRRART KLKQTEVDCE FLKRCCENLT EENQRLQKEV QELRALKLSS TQFYMQMTPP 240 TTLTMCTSCE RVAVPPNPPS STTVDPRSHH QLAQTHQRAF HINPWAPSAA HRPLDALRPR 300 S |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 135 | 141 | SRKKLRL |
2 | 185 | 193 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.9416 | 0.0 | boll| ovule| stem |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017634265.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT4-like | ||||
Swissprot | P46601 | 1e-102 | HAT2_ARATH; Homeobox-leucine zipper protein HAT2 | ||||
TrEMBL | A0A0B0N8D8 | 0.0 | A0A0B0N8D8_GOSAR; Homeobox-leucine zipper HAT4-like protein | ||||
STRING | Gorai.008G233200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1563 | 26 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G16780.1 | 1e-96 | homeobox protein 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|