PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1954
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 327aa    MW: 36527.8 Da    PI: 7.5554
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1954genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20178228255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAaka+++a+ kl+g
  Gh_A12G1954 178 HYRGVRQRP-WGKFAAEIRDP---NrRGSRIWLGTFDTAIEAAKAYDRAAFKLRG 228
                  8********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.85E-32177236No hitNo description
Gene3DG3DSA:3.30.730.102.1E-32177237IPR001471AP2/ERF domain
SMARTSM003804.3E-37178242IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-23178237IPR016177DNA-binding domain
PfamPF008472.1E-14178228IPR001471AP2/ERF domain
PROSITE profilePS5103224.223178236IPR001471AP2/ERF domain
PRINTSPR003671.4E-13179190IPR001471AP2/ERF domain
PRINTSPR003671.4E-13218238IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MESSSEVSSA LQYIEQYLLD ENQFTPAGLG SFSTANQWIN EPIPEVSTSP SQSLCSQTST  60
SDSCLTLSNF NCLDVDDFFN FSPNFPGFES NRMDVFEFDS KPQFIHLTAP KPFEFAPQIT  120
ELSAVKPPAP SNSSSSSHNR KPSLKISLPH KVEWIQFRKP YSTKAQPTNS NSEDKNKHYR  180
GVRQRPWGKF AAEIRDPNRR GSRIWLGTFD TAIEAAKAYD RAAFKLRGSK AILNFPLEAG  240
KLDVTAVDGE RKRSRGDGAW DEKQVKAVKR ANDDVTKARD NGDGPLTPSN WTSFMDWNNE  300
AKGIFNMPLL SPLSPHPPLG FQQVTVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-30175237264ATERF1
3gcc_A7e-30175237264ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.150610.0ovule| stem
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016728767.10.0PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotO803415e-70EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A1U8MPL70.0A0A1U8MPL7_GOSHI; ethylene-responsive transcription factor 5-like
STRINGGorai.008G232600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.14e-56ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]