PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G1904 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LSD | ||||||||
Protein Properties | Length: 175aa MW: 18807.1 Da PI: 8.4851 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41.9 | 1.7e-13 | 40 | 64 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V Gh_A12G1904 40 CSGCRNLLLYPVGATSVCCAVCNAV 64 ************************9 PP | |||||||
2 | zf-LSD1 | 46.4 | 6.4e-15 | 79 | 103 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Gh_A12G1904 79 CGGCHTLLMYIRGATSVQCSCCHTV 103 ************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.3E-12 | 37 | 67 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.9E-10 | 40 | 64 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.2E-14 | 76 | 105 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.8E-12 | 79 | 103 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MEIQINILWG SQTVPLAPYP TPPAPYTPPA ANGAQSQLVC SGCRNLLLYP VGATSVCCAV 60 CNAVTAVPPP GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEVC NFVTSVGVSS 120 QAQLVLLNRS STAETILDPK SDIRSNKFAF VHYKYLPPRL RPIGKWRKLL LLALY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027345016.1 | 1e-60 | protein LOL1-like isoform X2 | ||||
Swissprot | Q93ZB1 | 2e-49 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A2P5C7N2 | 3e-58 | A0A2P5C7N2_PARAD; Zinc finger, LSD1-type | ||||
STRING | cassava4.1_018557m | 9e-58 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7293 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 5e-36 | lsd one like 1 |
Publications ? help Back to Top | |||
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