PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G1889 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 331aa MW: 37499.1 Da PI: 8.4771 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44 | 4e-14 | 124 | 175 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A+e++k+L+ Gh_A12G1889 124 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 175 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.85E-13 | 122 | 179 | No hit | No description |
SuperFamily | SSF47459 | 8.94E-17 | 122 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.9E-14 | 122 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.199 | 123 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-11 | 124 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-10 | 129 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MLESGLVFRE TRIASYIVWR CRLGFSREMT LETLSSNDLL NFVIYDTISA TPYSGNDFFM 60 TTFSMEEQST STALNCFPMV TPPQCCRSTA TEAVERRPNL AVQGRKKRRR KPRLCKNKEE 120 AETQRMTHIA VERNRRKQMN EHLAVLRSLM PESYVQRGDQ ASIVGGAIEF VKELEHLLQT 180 LEAEKFRVLQ QVTPAAAANE ETTNTNSKML SSPPFAQFLM QPQYTWSQIP NKYTSKTKAS 240 IADIEVTLIE THANLRILLR KGPTQLSKLV AGFQSLFLSI LHLNVTTLDP FVLYSISAKV 300 DEGCQLSSVD DIARAVHHMI RIIEQDATAL C |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 110 | RKKRRRK |
2 | 104 | 111 | RKKRRRKP |
3 | 105 | 110 | KKRRRK |
4 | 124 | 135 | RMTHIAVERNRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:17088607}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243165 | 0.0 | AC243165.1 Gossypium hirsutum clone MX179E13-jom, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016736694.1 | 0.0 | PREDICTED: transcription factor bHLH71-like | ||||
Swissprot | Q56XR0 | 9e-75 | BH071_ARATH; Transcription factor bHLH71 | ||||
TrEMBL | A0A1U8NFU2 | 0.0 | A0A1U8NFU2_GOSHI; transcription factor bHLH71-like | ||||
STRING | Gorai.008G225800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10389 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46690.1 | 5e-71 | beta HLH protein 71 |
Publications ? help Back to Top | |||
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