PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G1884 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HSF | ||||||||
Protein Properties | Length: 511aa MW: 56227.5 Da PI: 4.7963 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.9 | 5e-36 | 45 | 136 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++++ ++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i Gh_A12G1884 45 FLSKTYDMVDDPATDAIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLRNIS 132 9********************999*****************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Gh_A12G1884 133 RRKP 136 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.31E-36 | 40 | 134 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 9.7E-66 | 41 | 134 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.6E-40 | 41 | 134 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.1E-20 | 45 | 68 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.6E-32 | 45 | 134 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-20 | 83 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 84 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-20 | 96 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MDGVSSSSNN QTDASTSGGG TQTATQPQPM PQPVAGHSAN GPPPFLSKTY DMVDDPATDA 60 IVSWSPTNNS FVVWNPPEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF 120 LRGQKHLLRN ISRRKPAHGH GHQQTQQPHG QSSSMGACVE VGKFGLEEEV ERLKRDKNVL 180 MQELVRLRQQ QQTTDNQLQN MVQRLQGMEQ RQQQMMSFLA KAVQSPSFFA QFVHQQNESN 240 RRISETNKKR RLKQDGIIDK DHSTASDGQI VKYQPLMNDA KAMLMQMMKG DASPRLDSFN 300 NSNEHTLIGD GSSSSSGLDG GNSSSRVSGV TLQEVSPTSG ISGHCPSAAI SEIQSSPCTT 360 SSERITTAEL PDVSALIGAE KPPSVSVTQT DVIMPDLSQI LEMVPESIVD IPTEMGNDGL 420 IDPDTLAVNG LLSIELDDIG SDPDIDALLV NSPFFHDLFP SPVCEEIEST SMEGKSKENE 480 GQAMDDGWDK YQHMDKLTEQ MGLLRSENKG I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-29 | 30 | 134 | 12 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-29 | 30 | 134 | 12 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-29 | 30 | 134 | 12 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 246 | 253 | NKKRRLKQ |
2 | 247 | 252 | KKRRLK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.3428 | 0.0 | boll| ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR067406 | 0.0 | KR067406.1 Gossypium hirsutum HSF25 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016736699.1 | 0.0 | PREDICTED: heat shock factor protein HSF8-like isoform X1 | ||||
Swissprot | Q40152 | 0.0 | HSF8_SOLLC; Heat shock factor protein HSF8 | ||||
TrEMBL | A0A1U8NFU5 | 0.0 | A0A1U8NFU5_GOSHI; heat shock factor protein HSF8-like isoform X1 | ||||
STRING | Gorai.008G225200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6470 | 24 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 1e-126 | heat shock transcription factor A1D |
Publications ? help Back to Top | |||
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