PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G1782

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 362aa MW: 41709.4 Da PI: 8.3321

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G1782	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	180	199	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+ G C+ Gd C FaHg Gh_A12G1782 180 CPAFRN-GKCQKGDACEFAHG 199 555655.*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	5.8E-4	174	200	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.338	174	201	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.1E-5	180	199	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.1E-5	180	202	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	28	209	232	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MDSDLVRSVH TSNARRMIYY CYTKLMLKIK LFKLLERLIS FDEYEAYRKN QCRRCLGFHI 60 ETVVDKYDYG SKLISSNKEQ QFISSFNLAQ AHAEAEAEAQ AQAQAQAQAQ AQAQAQALAR 120 YNNALDEAIY GSDEFRMYAY KIKRCTRMRS HDWTECPYAH RGEKAQRRDP RKFPYTAIAC 180 PAFRNGKCQK GDACEFAHGV FEYWLHPVKY RTRACNAGMF CQRKVCFFAH TPDQLRSDSK 240 FSGPFAHKGR MVMKRRGDHQ LMMMMMGSPS GGVEGSTSMQ AQYVEPSPPP PPPPHQLEGV 300 STLLKSLRVL KMREDEEREL NNKKNKNNSI KYEDEDEDGD GDGVEMADMD LPHLDWITEL 360 VK

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MDSDLVRSVH TSNARRMIYY CYTKLMLKIK LFKLLERLIS FDEYEAYRKN QCRRCLGFHI  60
ETVVDKYDYG SKLISSNKEQ QFISSFNLAQ AHAEAEAEAQ AQAQAQAQAQ AQAQAQALAR  120
YNNALDEAIY GSDEFRMYAY KIKRCTRMRS HDWTECPYAH RGEKAQRRDP RKFPYTAIAC  180
PAFRNGKCQK GDACEFAHGV FEYWLHPVKY RTRACNAGMF CQRKVCFFAH TPDQLRSDSK  240
FSGPFAHKGR MVMKRRGDHQ LMMMMMGSPS GGVEGSTSMQ AQYVEPSPPP PPPPHQLEGV  300
STLLKSLRVL KMREDEEREL NNKKNKNNSI KYEDEDEDGD GDGVEMADMD LPHLDWITEL  360
VK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Specifically expressed in embryo (at protein level). {ECO:0000269\|PubMed:9501112}.

Functional Description ? help Back to Top
Source	Description
UniProt	Embryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269\|PubMed:9501112}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616595	0.0	JX616595.1 Gossypium hirsutum clone NBRI_GE61372 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016721175.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 54-like
Swissprot	O65036	4e-70	C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBL	A0A1U8M2Z8	0.0	A0A1U8M2Z8_GOSHI; zinc finger CCCH domain-containing protein 54-like
STRING	Gorai.008G213800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11527	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07500.1	1e-69	C3H family protein