PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1781
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 223aa    MW: 25422.1 Da    PI: 10.4346
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1781genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53.1e-1396141247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+  ++++ ++lG+g+W+ I++     Rt+ q+ s+ qky
      Gh_A12G1781  96 KPWTEEEHRMFLEGLRKLGKGDWRGISKNYVISRTPVQVASHAQKY 141
                      58*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.598724IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.15190146IPR017930Myb domain
SuperFamilySSF466891.94E-1693147IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-1893144IPR006447Myb domain, plants
SMARTSM007173.6E-1194144IPR001005SANT/Myb domain
PfamPF002494.2E-1296141IPR001005SANT/Myb domain
CDDcd001671.85E-1097142No hitNo description
Gene3DG3DSA:1.10.10.602.8E-1197140IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MAKGTGRKCS HCGHNGHNSR TCSNGKRGYV KLFGVNIAAM AQTQECLMQR SFSMGNLPFH  60
AENHNNGGGV DDGYFSEGHI HSENHNAAAH DIKRAKPWTE EEHRMFLEGL RKLGKGDWRG  120
ISKNYVISRT PVQVASHAQK YFLRLQDAGN NRKKRRPSLF DMSFQESKSE SVLPLNPILT  180
TCLYVQFNLF MLMTRVTWFK FHRMNVLGVP PQKNPVLEIH LRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016721177.11e-125PREDICTED: uncharacterized protein LOC107933474
RefseqXP_017635540.11e-125PREDICTED: uncharacterized protein LOC108477505
SwissprotQ9FKF91e-54M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A0D2TA311e-141A0A0D2TA31_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.008G213600.11e-142(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.16e-57MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]