PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G1657

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 325aa MW: 36033.8 Da PI: 6.1781

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G1657	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	91.9	1.3e-28	55	146	3	73
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssa...sec 73 g+kdrhsk++T +g+RdRR+Rls+++a++++dLq++LG+ ++sk ++WLl++ k i++l+ + + +++ Gh_A12G1657 55 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQERLGVGQPSKVVDWLLEATKDDIDKLPPLqmplgfnqfhqpllvphepnpP---FldpNSM 146 79************************************************************98888888777777775443331...1222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	29.038	56	114	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.1E-25	56	119	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MISSSREAKQ EGETNDGSGG GNKLSKGPSS SSSSRHWSSA GFRNPRIVRV SRSFGGKDRH 60 SKVCTVRGLR DRRIRLSVPT AIQLYDLQER LGVGQPSKVV DWLLEATKDD IDKLPPLQMP 120 LGFNQFHQPL LVPHEPNPPF LDPNSMLMKD GEEEDQRMAG DRDKGKWIKM NEDENHGGNN 180 NNNIEDQRLF PLTNHSPFPG LLNNGMPLNS YYHWEPSSLS LSQFGNHGLM APQTENFFNG 240 NATSVPLPCS TTVPSATMAS FFPTYPPYGT NPGSNDSRQM NYLQLLSSSF LSNSMKPFSL 300 NVNAGLTHTQ NDDENHGDDQ DNTDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-18	61	115	1	55	Putative transcription factor PCF6
5zkt_B	1e-18	61	115	1	55	Putative transcription factor PCF6
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269\|PubMed:25378179}.
Uniprot	TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, buds, flowers and immature siliques. {ECO:0000269\|PubMed:17307931}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00065	PBM	Transfer from AT5G60970	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017628892.1	0.0	PREDICTED: transcription factor TCP17
Refseq	XP_017628896.1	0.0	PREDICTED: transcription factor TCP17
Swissprot	Q9FME3	4e-57	TCP5_ARATH; Transcription factor TCP5
TrEMBL	A0A1U8NS25	0.0	A0A1U8NS25_GOSHI; transcription factor TCP17-like
STRING	Gorai.008G199700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3576	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	8e-54	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]