PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G1620

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 358aa MW: 40570 Da PI: 8.0062

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G1620	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.3	1.2e-56	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL kkv + ++++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat+sgyWkatgkdke+++ +++ Gh_A12G1620 16 LPPGFRFHPTDEELISHYLYKKVLDVNFSA-KAIGEVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATDSGYWKATGKDKEIYR-GKS 111 79************************99.88***********888999************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfykgrapkgekt+Wvmheyrle Gh_A12G1620 112 LVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 142 ***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-65	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	60.233	16	166	IPR003441	NAC domain
Pfam	PF02365	1.4E-29	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MANIGAIGQE NDQMDLPPGF RFHPTDEELI SHYLYKKVLD VNFSAKAIGE VDLNKSEPWE 60 LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATDSGYWKAT GKDKEIYRGK SLVGMKKTLV 120 FYKGRAPKGE KTNWVMHEYR LEGKYSVHNL PKTAKNEWVI CRVFQKSSGG KKTHISGLVN 180 MGSFGNELGP SGLPPLMDSS SSFNAKKNPV SESVYVPCFS NPVDVQRIQL DTIDHFPENP 240 LLLPVSSNPT NIFPRFQASN PFFSAQPITF PPNLHLPGSV LMQDQSILRD LLENHGSNMK 300 SERETMVTVS QETGLTTDIN NEISSVVSNL EIRKRPFDDQ QHPSASTGPL DFDCFWHY

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MANIGAIGQE NDQMDLPPGF RFHPTDEELI SHYLYKKVLD VNFSAKAIGE VDLNKSEPWE  60
LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATDSGYWKAT GKDKEIYRGK SLVGMKKTLV  120
FYKGRAPKGE KTNWVMHEYR LEGKYSVHNL PKTAKNEWVI CRVFQKSSGG KKTHISGLVN  180
MGSFGNELGP SGLPPLMDSS SSFNAKKNPV SESVYVPCFS NPVDVQRIQL DTIDHFPENP  240
LLLPVSSNPT NIFPRFQASN PFFSAQPITF PPNLHLPGSV LMQDQSILRD LLENHGSNMK  300
SERETMVTVS QETGLTTDIN NEISSVVSNL EIRKRPFDDQ QHPSASTGPL DFDCFWHY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-56	9	172	10	174	NAC domain-containing protein 19
3swm_B	1e-56	9	172	10	174	NAC domain-containing protein 19
3swm_C	1e-56	9	172	10	174	NAC domain-containing protein 19
3swm_D	1e-56	9	172	10	174	NAC domain-containing protein 19
3swp_A	1e-56	9	172	10	174	NAC domain-containing protein 19
3swp_B	1e-56	9	172	10	174	NAC domain-containing protein 19
3swp_C	1e-56	9	172	10	174	NAC domain-containing protein 19
3swp_D	1e-56	9	172	10	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ914142	0.0	JQ914142.1 Gossypium hirsutum NAC domain protein 11 (NAC11) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016730967.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-154	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1U8MVV5	0.0	A0A1U8MVV5_GOSHI; NAC domain-containing protein 100-like
STRING	Gorai.008G194400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-156	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]