PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1611
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 303aa    MW: 35003.1 Da    PI: 6.0029
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1611genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.86.7e-26145194352
       RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  k +s +++s+yF++pi +AAkeL+v+lT+LK++CR++GI+RWPhRk++sl
  Gh_A12G1611 145 KLLSRKVISQYFYMPIIQAAKELNVGLTLLKKRCRELGIRRWPHRKLTSL 194
                  67899******************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.53130214IPR003035RWP-RK domain
PfamPF020425.1E-21147194IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MANQCPLNGC WFKSSEMIAK EEEHYSSPFP PRLPLDSSTT VYCNPMDWQF PIEQGFYDEV  60
PLMSTFSTDP LYASLDIEQT STQVYIIIAD GYDENGNGFW DELGLLFEPC NKQPMLKDED  120
INGEEVMKKE RVSSKRCKED QRKAKLLSRK VISQYFYMPI IQAAKELNVG LTLLKKRCRE  180
LGIRRWPHRK LTSLRTLINN VQELEEGEER ESKVREAIEV LERERKMLEE MPDMELEDKT  240
KRLRQACFKA NYKKRKLVPP SIMNQSPSST GAVGSRASDL DLITRANCRR GLSDSFSSTI  300
SMI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5804525e-97JX580452.1 Gossypium hirsutum clone NBRI_GE12885 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635951.10.0PREDICTED: protein RKD1-like
TrEMBLA0A1U8M5M60.0A0A1U8M5M6_GOSHI; protein RKD1-like
STRINGGorai.008G193400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121801932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.12e-39RWP-RK domain-containing protein