PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1600
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 87aa    MW: 9729.01 Da    PI: 5.0206
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1600genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.62e-0711541455
                 HHHHHHHHHHHCTSCCC...TTS-..STCHHHHHHHHHHHHHHH CS
          HLH 14 driNsafeeLrellPkaskapskK..lsKaeiLekAveYIksLq 55
                 d++N  + +L +llP++ ++++++  +s   iL++++ YI+ Lq
  Gh_A12G1600 11 DELNALILRLGTLLPQLNHGRHGRasPSTTKILKETCSYIRRLQ 54
                 679*************765666665799***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.0E-81157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-51154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-81172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSGASNNITD DELNALILRL GTLLPQLNHG RHGRASPSTT KILKETCSYI RRLQKEVDDL  60
SERLLQCLDS MDITSSDAEF LTNLLQQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:16527868}.
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. Regulates light responses by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20305124}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by exogenous gibberellin. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016731041.13e-57PREDICTED: transcription factor ILI3-like
SwissprotF4JCN92e-18PRE4_ARATH; Transcription factor PRE4
TrEMBLA0A1U8MW246e-56A0A1U8MW24_GOSHI; transcription factor ILI3-like
TrEMBLA0A2P5YWD36e-56A0A2P5YWD3_GOSBA; Uncharacterized protein
STRINGGorai.008G192000.14e-53(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1835148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47710.17e-21BANQUO 3
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]