PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1560
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 345aa    MW: 38262.3 Da    PI: 6.248
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1560genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14161207354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Gh_A12G1560 161 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 207
                  79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-12161207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-14162216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-14162214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.85E-5171210No hitNo description
Gene3DG3DSA:3.30.70.2609.4E-5243302No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MCGKKDEDQG ECPQTIHNIQ GYQEQLYMQQ QHQQMQQQQH NIDLFGGTRG GLIFPEVSPI  60
LPWSLPPIHN FNPALFTGNP VRDDDPFLVP PPPTSYGGLF NRRAPSLQFA YDGTSADHLR  120
ILSDTLGPVV QPGSAPFGLQ AELGKMTAQE IMDAKALAAS KSHSEAERRR RERINNHLAK  180
LRSLLPSTTK TDKASLLAEV IQHVKELKRQ TSLIAETSPV PTEIDELTVD TSEEDGKFVI  240
KASLCCEDRS DLLPDLIKTL KALRLKTLKA EITTLGGRVK NVLFITGEED SSSSAEQQQQ  300
QLQYCISSIQ EALKAVMEKT SVDESSSGNV KRQRTNIGIL EHRSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016722799.10.0PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y11e-115BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1U8MB720.0A0A1U8MB72_GOSHI; transcription factor bHLH30-like
STRINGGorai.008G186700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70482843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-89bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]