PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1496
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 348aa    MW: 39159.6 Da    PI: 4.4195
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1496genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-194797256
          AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 ++ GVr+++ +grWvAeI+d      ++ r++lg+++taeeAa+a+++a+  l+ge
  Gh_A12G1496 47 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTYDTAEEAARAYDEAAYLLRGE 97
                 789******.7*********33....35***********************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.83E-3146103No hitNo description
Gene3DG3DSA:3.30.730.104.2E-2747103IPR001471AP2/ERF domain
PfamPF008473.2E-144797IPR001471AP2/ERF domain
PROSITE profilePS5103220.03347104IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-1947104IPR016177DNA-binding domain
SMARTSM003802.3E-3447110IPR001471AP2/ERF domain
PRINTSPR003679.9E-84859IPR001471AP2/ERF domain
PRINTSPR003679.9E-87086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGKRKVMATD VIDEEKGNNN VDEKPAMDAN VAAVAAALSG GRRARKRFVG VRQRPSGRWV  60
AEIKDTIQKI RVWLGTYDTA EEAARAYDEA AYLLRGENTR TNFWPFSPSS ISKPALPSKI  120
ANLLLLRLKA RNDAASASSN MPPNFPLNQL DTICFDDFFN VPEDCSTSSS DCMRESFGST  180
CADPKSLHLE DNNNVDGNPD YVGSKEDIDI MDFQFLDSFG SSCDYCSPFE IAEEMVEPVQ  240
EQQEDINSDD LDPCMLRETM KRMKYERKFS ASLYAFNGIP ECLRLKQHES ENNHNIQQQC  300
QPSNLRNSNS CENEMRLEFK EEDNQGIGSS SACEMWSLPD LPSITFIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-14471031471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016704310.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A1U8KPE50.0A0A1U8KPE5_GOSHI; ethylene-responsive transcription factor RAP2-11-like
STRINGGorai.008G178900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1961567
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-14related to AP2 11