PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G1457

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 295aa MW: 32785.3 Da PI: 8.6672

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G1457	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.8	2.6e-15	54	103	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P+ ++K + a+ L +++eY++ Lq Gh_A12G1457 54 RSKHSVTEQRRRSKINERFQILRDLIPNT----DQKRDTASFLLEVIEYVQFLQ 103 899***********************8....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.4E-23	50	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.8E-19	50	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.31E-14	51	107	No hit	No description
PROSITE profile	PS50888	16.323	52	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-12	54	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-12	58	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MRRGKASQEE EEFGSKKTRP SSFHTLSVNA NTNTNTNINN EADGKDSDKA KAIRSKHSVT 60 EQRRRSKINE RFQILRDLIP NTDQKRDTAS FLLEVIEYVQ FLQEKVQKYE GSYQGWSSEP 120 TKLKPWRNSH WRGQSFVDHT QAIKNDPGLG STFSGKLDEK NINISPSMIA SALDSSEADP 180 VRDNEQAELA VPIQGGHPLQ RPVSEAQKCL TSNDTLNQQD DLAIEGGTIS ISSVYSQGLL 240 NTLTQALQRT GLDLSQANIS VQIDLGKRCN RGLTSSAKES ANGEDSNPVQ KRLKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.20767	0.0	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016722754.1	0.0	PREDICTED: transcription factor BIM2-like isoform X1
Swissprot	Q9CAA4	1e-100	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A1U8MB24	0.0	A0A1U8MB24_GOSHI; transcription factor BIM2-like isoform X1
STRING	Gorai.008G175100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5987	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-100	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]