PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G1319

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 470aa MW: 53491.3 Da PI: 8.7457

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G1319	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.8	3.5e-12	287	330	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + Er+RR++i++++++Lr l+Pk + K++ +iL+ A+eYI +Lq Gh_A12G1319 287 ITERNRRKKIKDGLFKLRALVPKiS------KMDITAILTDAIEYIGNLQ 330 68*******************66......**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	8.6E-18	11	158	IPR025610	Transcription factor MYC/MYB N-terminal
SuperFamily	SSF47459	2.09E-13	276	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.344	280	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.09E-10	283	334	No hit	No description
SMART	SM00353	1.4E-11	286	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-9	287	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-14	287	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MRGFERAVEW LRSFVYSNAW DFCVVWKLGD DPSRFIEWKD CCCSGGINVK VEQDKLQHQG 60 PPLCRDVQFQ HSIRSKACEA LSHFPFTVSL YSGENRIHGE VAISSQPKWL NHANISTSLS 120 SEETMGTHVL IPVFGGLIEL FASKNIPKDQ NIIELIRTEC NALLKAETTT AESYRKANLH 180 KWYLNTLQEK DLPFSMSLST VNPRIQFIPS IGHPPFSSAS AYISQDERLK QPIGTYYGSK 240 RLGCSQNVCA QETEAGFVLD CKVNSVNDKM RTAKQPEKVN YHSKNLITER NRRKKIKDGL 300 FKLRALVPKI SKMDITAILT DAIEYIGNLQ EEEKKLRNEL KKTEEGDCGK SNAELKSAKL 360 DWLHRKNMSA IEENHVPSGI SEMAKMEVHV EVNQITKREF WIKLCYKHKR SGFAKLMEGM 420 DSLGLGVIDA NITTFNGNVL NIFKVEGFRV QAIERLVDPP NKLDKQRYTV

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MRGFERAVEW LRSFVYSNAW DFCVVWKLGD DPSRFIEWKD CCCSGGINVK VEQDKLQHQG  60
PPLCRDVQFQ HSIRSKACEA LSHFPFTVSL YSGENRIHGE VAISSQPKWL NHANISTSLS  120
SEETMGTHVL IPVFGGLIEL FASKNIPKDQ NIIELIRTEC NALLKAETTT AESYRKANLH  180
KWYLNTLQEK DLPFSMSLST VNPRIQFIPS IGHPPFSSAS AYISQDERLK QPIGTYYGSK  240
RLGCSQNVCA QETEAGFVLD CKVNSVNDKM RTAKQPEKVN YHSKNLITER NRRKKIKDGL  300
FKLRALVPKI SKMDITAILT DAIEYIGNLQ EEEKKLRNEL KKTEEGDCGK SNAELKSAKL  360
DWLHRKNMSA IEENHVPSGI SEMAKMEVHV EVNQITKREF WIKLCYKHKR SGFAKLMEGM  420
DSLGLGVIDA NITTFNGNVL NIFKVEGFRV QAIERLVDPP NKLDKQRYTV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017636544.1	0.0	PREDICTED: transcription factor bHLH90-like isoform X1
TrEMBL	A0A2P5YT77	0.0	A0A2P5YT77_GOSBA; Uncharacterized protein
STRING	Gorai.008G159000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6985	27	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	8e-70	bHLH family protein