PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1311
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 208aa    MW: 22926.5 Da    PI: 8.3935
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1311genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00037799123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C +C k F ++  L  H++ H
  Gh_A12G1311 77 FECRYCFKEFANSQALGGHQNAH 99
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-572103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.87E-772104No hitNo description
PROSITE profilePS5015711.32377104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MAKDACSGAY HTCDSGNGYS QAGSCGGKKL KLFGFELSPS KNNGNFLKGC VEGDESINSS  60
SRAAGVDDGD STDEKKFECR YCFKEFANSQ ALGGHQNAHK KERMKKKRLQ LQAKRAASIN  120
SYLQPLHDSC YPNHFTLYQE PPQIRFDHYQ QETRLGASQI IHFQQDSSIF TITPADSTKP  180
SKQWCKSLDL QLGLSLQSTI HSSSGTGI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4340635e-41KM434063.1 Gossypium hirsutum C2H2 zinc finger protein 5 (ZFP5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635591.11e-152PREDICTED: zinc finger protein 5-like
TrEMBLA0A2P5XAJ31e-149A0A2P5XAJ3_GOSBA; Uncharacterized protein
STRINGGorai.008G158200.11e-147(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73252541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.17e-17C2H2 family protein