PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G1284

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 1759aa MW: 197528 Da PI: 5.4733

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G1284	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.3e-18	29	83	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ ++ ++yps+++r+eL+ +lgL++rq ++WF+ rR k++k Gh_A12G1284 29 KRKMKTASQLEVLEKTYATEMYPSEATRAELSVQLGLSDRQLQMWFCHRRLKDRK 83 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-18	12	83	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.7E-16	19	83	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.552	24	84	IPR001356	Homeobox domain
SMART	SM00389	1.5E-17	26	88	IPR001356	Homeobox domain
CDD	cd00086	5.22E-14	27	83	No hit	No description
Pfam	PF00046	3.6E-16	29	83	IPR001356	Homeobox domain
SMART	SM00571	3.9E-23	565	624	IPR018501	DDT domain
PROSITE profile	PS50827	17.347	565	624	IPR018501	DDT domain
Pfam	PF02791	1.3E-17	566	621	IPR018501	DDT domain
Pfam	PF05066	6.5E-13	746	814	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.3E-8	955	993	IPR028942	WHIM1 domain
Pfam	PF15613	2.9E-11	1137	1208	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1759 aa Download sequence Send to blast
METGGISGGD GGSSEGEKKK PQEGETKVKR KMKTASQLEV LEKTYATEMY PSEATRAELS 60 VQLGLSDRQL QMWFCHRRLK DRKAAPLKRQ RKYSTSSAHL VGVAGEEMGG SEAGNEHGSG 120 GSSLLGHGLD LKRVVPRAGM TIPRYYEMTH SMAELELRAI KFAELQLGEP IRDDGPMFGM 180 EFDPLPPGAF GAPIGASTAV QQKQPGGPFE TKIYDRRDTK TVKGSVRAVC EYQFLLEQPT 240 VRTETYGRFP LSFNYGLPTD GRFPLSFNYG LPTDGPNARV SSLSAGCSSL LGNEQVQPGY 300 GFPGQIPNLN LLPQQSRPGH LLPTASGEYD YVSRINSSTN TALDANIGSH PISALGSPFV 360 SSDRRVCLDD DVLRKERKRK GEEDRITREI EAHEKRIRRE LEKQDMLKRK REEQIRKEMR 420 RHEHEKRKEE ERLLREKHRE EERYQREQRR ELERREKFLM KESIRAERLR IKEELRKEKE 480 AARLRATNER AIARKLAKES MEPVEDEYLE LMEIATSSKG LSSTLPLGFE ALQNLDIFRD 540 KLCEFPPKTV QLKRPFSIQP WNGSEENVGN LLMVWRFLIT FADVLGLWPF TLDELVQAFH 600 DYDPRLLGEI HVALLRSIIK DIEDVARTPS TGAGASQNSA ANPGGGHPQI VEGAYAWGFD 660 IRSWQRHLNV LTWPEILRQF ALSAGFGPQL KKRNIQQAYL CDGNEGNNGE DIITNFRNGA 720 AANAIAIMQE RGFSNPRRSR HRLTPGTVKF AAFHILSLEG SKGLTVLEVA EKIQKSGLRD 780 LTTNKAQEAS IAAAFSRDTK LFDRTAPSTY CVRSPYRKDP ADAEAILSTA REGIRVFKSE 840 ILGVDAEVAE RDEDSESDIP EDPVADDLGA EINAKKEIHN SEERSSSVRE TISGKEESAI 900 METPQVEVGN ACKGLSSPHS GGFDKVKQID ASTEQSADAA SSGQEDMEID ESSPGELWVQ 960 GLMEGDYSDL SVEERLNALV ALISIAIEGN FIRIVLKERL EAANALKKQI WTEAQLDKRR 1020 IKEDFVLRTY YSYMGNPVKN RLVMSSAECR ESPQIIGDKK DHDSSVYHVV QQECLNNPQN 1080 DQNCLNNMAT EGNLPVQDFS FAPDNLQYQQ PGYALDRSRS LLKSYIGHKA EEMYAYRSLP 1140 LGQDRRRNRY WQFTTTSCND PGCGRIFIEL LDGHWRLIDT EEGFDALLSF LDVRGIRESL 1200 LHAMLLKIEM SFKEAVARNK LHVNERQKGD TAKEKANEMA SGLDWSVYSE SPSSILCGSD 1260 SDMSETSSFS IELGRDENEK NNALKRYQDF EKWMWKECFS SLTFSVMKDG ERMCKELLGV 1320 CDSCFNVYFV KDNHCPSCHT TYIASESAFS EHVAQCAQKM QMGAELALDG SVFSPLRIRL 1380 IKLQLALLEV SIPFEALQST WTEDYRNSWG MKLDSSTTAE ELLQILTLLE SSIRRDYLSA 1440 KFETTSEVLS SSNLSEHQVD YSSNLEAVPV LPWIPKTTAA VALRLMEFNA AISYTLTQGA 1500 ETKRDRGAEE FMELPPSKYT FVKNHQDDET MQTPNQVKYL QKASWDNVGI GFSGSGRGEV 1560 RRRGFGVICG GRYQRRPANS RSGSRERITT AKSGRLRPVV EWKSRSHRQG GRNHGRLNSR 1620 RPKVANRMVE SAGERESQKE IMGKSSRSCG MNAWNGDEVA LLETGTAGNG RSSESSGYKD 1680 EIRDECDYEE VDEYGGGFNG KDDDGEGSDY DIDRGEEDEI EERNLNGGYI KENSDEGVRD 1740 AADDLPYGYS TEGCSGFSE

Sequence ? help Back to Top

Protein Sequence Length: 1759 aa Download sequence Send to blast

METGGISGGD GGSSEGEKKK PQEGETKVKR KMKTASQLEV LEKTYATEMY PSEATRAELS  60
VQLGLSDRQL QMWFCHRRLK DRKAAPLKRQ RKYSTSSAHL VGVAGEEMGG SEAGNEHGSG  120
GSSLLGHGLD LKRVVPRAGM TIPRYYEMTH SMAELELRAI KFAELQLGEP IRDDGPMFGM  180
EFDPLPPGAF GAPIGASTAV QQKQPGGPFE TKIYDRRDTK TVKGSVRAVC EYQFLLEQPT  240
VRTETYGRFP LSFNYGLPTD GRFPLSFNYG LPTDGPNARV SSLSAGCSSL LGNEQVQPGY  300
GFPGQIPNLN LLPQQSRPGH LLPTASGEYD YVSRINSSTN TALDANIGSH PISALGSPFV  360
SSDRRVCLDD DVLRKERKRK GEEDRITREI EAHEKRIRRE LEKQDMLKRK REEQIRKEMR  420
RHEHEKRKEE ERLLREKHRE EERYQREQRR ELERREKFLM KESIRAERLR IKEELRKEKE  480
AARLRATNER AIARKLAKES MEPVEDEYLE LMEIATSSKG LSSTLPLGFE ALQNLDIFRD  540
KLCEFPPKTV QLKRPFSIQP WNGSEENVGN LLMVWRFLIT FADVLGLWPF TLDELVQAFH  600
DYDPRLLGEI HVALLRSIIK DIEDVARTPS TGAGASQNSA ANPGGGHPQI VEGAYAWGFD  660
IRSWQRHLNV LTWPEILRQF ALSAGFGPQL KKRNIQQAYL CDGNEGNNGE DIITNFRNGA  720
AANAIAIMQE RGFSNPRRSR HRLTPGTVKF AAFHILSLEG SKGLTVLEVA EKIQKSGLRD  780
LTTNKAQEAS IAAAFSRDTK LFDRTAPSTY CVRSPYRKDP ADAEAILSTA REGIRVFKSE  840
ILGVDAEVAE RDEDSESDIP EDPVADDLGA EINAKKEIHN SEERSSSVRE TISGKEESAI  900
METPQVEVGN ACKGLSSPHS GGFDKVKQID ASTEQSADAA SSGQEDMEID ESSPGELWVQ  960
GLMEGDYSDL SVEERLNALV ALISIAIEGN FIRIVLKERL EAANALKKQI WTEAQLDKRR  1020
IKEDFVLRTY YSYMGNPVKN RLVMSSAECR ESPQIIGDKK DHDSSVYHVV QQECLNNPQN  1080
DQNCLNNMAT EGNLPVQDFS FAPDNLQYQQ PGYALDRSRS LLKSYIGHKA EEMYAYRSLP  1140
LGQDRRRNRY WQFTTTSCND PGCGRIFIEL LDGHWRLIDT EEGFDALLSF LDVRGIRESL  1200
LHAMLLKIEM SFKEAVARNK LHVNERQKGD TAKEKANEMA SGLDWSVYSE SPSSILCGSD  1260
SDMSETSSFS IELGRDENEK NNALKRYQDF EKWMWKECFS SLTFSVMKDG ERMCKELLGV  1320
CDSCFNVYFV KDNHCPSCHT TYIASESAFS EHVAQCAQKM QMGAELALDG SVFSPLRIRL  1380
IKLQLALLEV SIPFEALQST WTEDYRNSWG MKLDSSTTAE ELLQILTLLE SSIRRDYLSA  1440
KFETTSEVLS SSNLSEHQVD YSSNLEAVPV LPWIPKTTAA VALRLMEFNA AISYTLTQGA  1500
ETKRDRGAEE FMELPPSKYT FVKNHQDDET MQTPNQVKYL QKASWDNVGI GFSGSGRGEV  1560
RRRGFGVICG GRYQRRPANS RSGSRERITT AKSGRLRPVV EWKSRSHRQG GRNHGRLNSR  1620
RPKVANRMVE SAGERESQKE IMGKSSRSCG MNAWNGDEVA LLETGTAGNG RSSESSGYKD  1680
EIRDECDYEE VDEYGGGFNG KDDDGEGSDY DIDRGEEDEI EERNLNGGYI KENSDEGVRD  1740
AADDLPYGYS TEGCSGFSE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.22799	0.0	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016722695.1	0.0	PREDICTED: homeobox-DDT domain protein RLT2-like isoform X6
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A1U8M7F5	0.0	A0A1U8M7F5_GOSHI; homeobox-DDT domain protein RLT2-like isoform X6
STRING	Gorai.008G155100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9601	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator