PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1062
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 739aa    MW: 80698.2 Da    PI: 6.3237
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1062genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-162468147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
      Gh_A12G1062 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.98E-171874IPR009057Homeodomain-like
PROSITE profilePS5129421.0911973IPR017930Myb domain
TIGRFAMsTIGR015578.0E-172271IPR006447Myb domain, plants
SMARTSM007177.3E-132371IPR001005SANT/Myb domain
PfamPF002493.0E-132467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-82464IPR009057Homeodomain-like
CDDcd001671.41E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MDTYSSGEEL VLKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFS KLEKEALAKG VPIGQALDIE IPPPRPKRKP NNPYPRKTGA STTVQDGAKD  120
GKSETPISSS HCKQVLDLEK EPLPERPNGD EKSTNLKENQ DESFSGVFTL LCEANCPSAS  180
SMNKNFIPAS AALKSSCTFR EFVPSPKEVK IHDNGTSKAS NLEYSCTSYD KPAQGQRKDD  240
LDGALCADEM QAAQNYPRHV SVHVLDGSLR TCAQNPSLDM SFQDSVFCPM GDVHGPNLSA  300
NLAASATTEH QNNAPRSTQQ ALPPFHTSFM HLRPNQEDYR SFLHVSSTFS SFIVSTLLQN  360
PAAHAAASFA ARFWPYANIE SSGDSPAGGL GGFPSRQMNS APRMAAIAAA TVAAATAWWA  420
AHGLFPVCAT LHTGFTCFPA STAAVPPMEN GQPPAAKTEQ KGKTDQALSL QVEQLDPENS  480
EALQGQHSSS KSPTSSSSDC EERGDAKVNT GVKATDDEMA AEVIEPQDAN KTKNKKQVDR  540
SSCGSNTPSS SEVETDALEK HEKDKEDSKG ADPNHPQVEC NRRSSRSNSN LSDSWKEVSE  600
EGRLAFQALF SREVLPQSFS PPHDGKSKGQ QKENIGEDKQ NPAEEDEEIS TLDLNSNTWG  660
SCSDHQETVK NALSRDKNST EEGLLTIGLG HSKLKAGRTG FKPYKRCSVE AKENRVMNTG  720
SQGEEKCPKR VRLEGEPST
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.176480.0boll| ovule| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017637447.10.0PREDICTED: protein LHY-like isoform X2
TrEMBLA0A0B0NY930.0A0A0B0NY93_GOSAR; Protein LHY
STRINGGorai.008G132000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55762645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.31e-132MYB_related family protein