PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1061
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 736aa    MW: 81213.3 Da    PI: 6.4382
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1061genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-152468147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rW++eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
      Gh_A12G1061 24 RERWSEEEHNRFLEALKLYGRA-WQRIEEYIG-TKTAVQIRSHAQKF 68
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.32E-161874IPR009057Homeodomain-like
PROSITE profilePS5129420.321973IPR017930Myb domain
TIGRFAMsTIGR015571.5E-162271IPR006447Myb domain, plants
SMARTSM007173.1E-122371IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-82464IPR009057Homeodomain-like
PfamPF002498.8E-132467IPR001005SANT/Myb domain
CDDcd001675.70E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MDTYSSGEEL VIKTRKPYTI TKQRERWSEE EHNRFLEALK LYGRAWQRIE EYIGTKTAVQ  60
IRSHAQKFFS KLEKEALAKG VPIGQALDIE IPPPRPKRKP SNPYPRKTSA ATTVQEGAKD  120
GKSEMPLSSL RCKQMLDLEK EPLPERPTGD EKATNLKENQ DQSCSEVFTL LHEQNCSSAS  180
SMNKNFIPMS TALKSSCTFR EFVPLPKETF HDNGTSKASN LEKSCTSYEK SAQGQRKDDL  240
DGDFCADEMQ AAQNYPRHVA VHVLDGSLRT CVQNPSLGMS FQDSVFHPTG DVHGPNLFAN  300
PAASATTEHK NNAPKSTHQA LPPFHTPFIH LRPDQEEYRS FLHVSSTFSN LIVSTLLQNP  360
AAHAAASFAA TFWPYANIES SGDSPANELR GFPSTQMNSA PSMAAIAAAT VAAATAWWTA  420
HGLLPICAPL HTGFSCAPAS TAAVPPMENG QIPAANMEQK DKTDLALTTQ DERLYPEYSE  480
ALPGQHSASK SPTSSSSDCE ERVDAKANTE VKATDDEKAA EVIEPQDADK MKNRKQVDRS  540
SCGSNSSSEV ETDMLEKLEK DKEDPKGADP NHPQVECNRR SRSSSNLSDS WKEVSEEGRL  600
AFQALFSREV LPQSFSPPHD GKNKGQQKEN VGTDKQNPVE KDGETTTLDL NRKMLDSRSD  660
RQEVEKNALS KDEKNNAEDG LLRIGLGHAK LKASRTGFKP YKRCSVEAKE NRVMNTGSQG  720
EERGPKRVRL EGEAST
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.110500.0boll| ovule| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5261803e-94HQ526180.1 Gossypium herbaceum clone NBRI_E_1400 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016708869.10.0PREDICTED: protein LHY-like isoform X2
TrEMBLA0A1U8L6U90.0A0A1U8L6U9_GOSHI; protein LHY-like isoform X2
STRINGGorai.008G131800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55762645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.41e-124MYB_related family protein