PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G1033

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 222aa MW: 25918.9 Da PI: 5.098

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G1033	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.3	5.5e-18	21	75	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++f++eq++ Le++Fe+++ + +++ + Ak lgL+ rqV +WFqN+Ra++k Gh_A12G1033 21 KNKRRFSDEQIRSLESMFESESRLEPRKKLQVAKDLGLQPRQVAIWFQNKRARRK 75 67889************************************************99 PP
2	HD-ZIP_I/II	118.8	3e-38	22	113	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eq+++LE++Fe+e++Lep++K ++a++Lglqprqva+WFqn+RAR k+kqlE+dy++L+++yd+l+++ e+L+ke+++L+ +l++ Gh_A12G1033 22 NKRRFSDEQIRSLESMFESESRLEPRKKLQVAKDLGLQPRQVAIWFQNKRARRKSKQLERDYTMLQSNYDNLASKYESLKKEKQALAFQLQK 113 79*************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.03E-16	11	79	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-17	12	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.734	17	77	IPR001356	Homeobox domain
SMART	SM00389	2.8E-14	20	81	IPR001356	Homeobox domain
Pfam	PF00046	2.1E-15	21	75	IPR001356	Homeobox domain
CDD	cd00086	2.20E-12	24	78	No hit	No description
PRINTS	PR00031	5.7E-5	48	57	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	52	75	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.7E-5	57	73	IPR000047	Helix-turn-helix motif
Pfam	PF02183	8.0E-15	77	117	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MEDPFSGMPE ITTTKKKKNN KNKRRFSDEQ IRSLESMFES ESRLEPRKKL QVAKDLGLQP 60 RQVAIWFQNK RARRKSKQLE RDYTMLQSNY DNLASKYESL KKEKQALAFQ LQKLKDLVKK 120 PKEENNGQCC GDQQVITMEG EAIKSDSEEQ HSFSMERSEH GLGVLSDDDS TIMTSYFELE 180 QEPTSFITMV ELGPGGEDWH SFETDGLFDQ SSNGYQWWDF WS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.25678	1e-149	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016738107.1	1e-165	PREDICTED: homeobox-leucine zipper protein ATHB-7-like
Swissprot	P46897	8e-66	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A1U8NGE8	1e-164	A0A1U8NGE8_GOSHI; homeobox-leucine zipper protein ATHB-7-like
STRING	Gorai.008G128000.1	1e-149	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2498	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	2e-64	homeobox 7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]