PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A12G1020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 280aa MW: 32303.5 Da PI: 9.5213 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.5e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed llv++++ +G g+W++ +++ g+ R++k+c++rw +yl Gh_A12G1020 14 RGPWTPREDTLLVKYIQAHGEGHWRSFPKKAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.3e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l Gh_A12G1020 67 RGNITPDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112 7999******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.736 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.54E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.40E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.302 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-26 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.78E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 280 aa Download sequence Send to blast |
MGRAPCCSKV GLHRGPWTPR EDTLLVKYIQ AHGEGHWRSF PKKAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI TPDEEDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKRLLSQG 120 TDPNTHKKLP PDNPVVVLVP KKKRKKSNKR PNKSKKPTEQ EKPKIHLPKP IRFTSSVQCT 180 TKSSSQGGEN GQVLVPWSEY INDDENRTRF LCYNDDHDLI NNSDFECQSH HHHHHHHDHG 240 LGAQGDSNDS LEKIYEEYLQ LLKTNEDQVQ LDSFAESLLI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 139 | 155 | PKKKRKKSNKRPNKSKK |
2 | 141 | 145 | KKRKK |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | GU324346 | 1e-116 | GU324346.1 Theobroma cacao cultivar Scavina 6 TT2 like MYB transcriptoin factor (MYBPA) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016738120.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
TrEMBL | A0A1U8NGL5 | 0.0 | A0A1U8NGL5_GOSHI; transcription repressor MYB6-like | ||||
STRING | Gorai.008G126700.1 | 1e-180 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13540.1 | 2e-69 | myb domain protein 5 |