PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1016
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 633aa    MW: 70797.1 Da    PI: 6.7614
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1016genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.5e-24123223198
                  EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  f+k+lt sd++++g +++ +k+a+e+     +++ + +++lt +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +++el+
  Gh_A12G1016 123 FCKILTASDTSTHGGFSVLRKHATEClppldMNQATPTQELTAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGDNGELR 218
                  99****************************9555556679************************************************..3489999* PP

                  EEEE- CS
           B3  94 vkvfr 98 
                  v+v+r
  Gh_A12G1016 219 VGVRR 223
                  ***98 PP
2Auxin_resp104.61.2e-34249328183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aaha++t++ F v+Y+Pr+  s+F++ v+k+++a+++++svGmRfkm fe+eds+err++Gt+vgv d++p +W++SkWrsLk
  Gh_A12G1016 249 AAHAVTTQTLFVVYYKPRT--SQFIIGVSKYLEAINNRFSVGMRFKMGFEGEDSPERRFTGTIVGVGDASP-HWSESKWRSLK 328
                  79****************6..9**********************************************999.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-39113252IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-39116238IPR015300DNA-binding pseudobarrel domain
CDDcd100177.63E-21122223No hitNo description
PfamPF023627.2E-22123223IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111123225IPR003340B3 DNA binding domain
SMARTSM010191.1E-22123225IPR003340B3 DNA binding domain
PfamPF065075.9E-32249328IPR010525Auxin response factor
PfamPF023092.0E-7497554IPR033389AUX/IAA domain
SuperFamilySSF542771.05E-12514594No hitNo description
PROSITE profilePS5174527.12518610IPR000270PB1 domain
PfamPF023091.2E-5561598IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MAQPEGIPRE TGLGVDDLYP ELWKLCAGPL VEIPHVQERV FYFPQGHIEQ LEASTNQELN  60
YEAPLFNLSS KILCRVLHVQ LLAEQETEEV YAQITLQPEP DQSELTSPDP FPTEVPKREV  120
LSFCKILTAS DTSTHGGFSV LRKHATECLP PLDMNQATPT QELTAKDLHG YEWRFKHIFR  180
GQPRRHLLTT GWSTFVTSKR LVAGDAFVFL RGDNGELRVG VRRLGNQQST MPSSVISSQS  240
MHLGVLATAA HAVTTQTLFV VYYKPRTSQF IIGVSKYLEA INNRFSVGMR FKMGFEGEDS  300
PERRFTGTIV GVGDASPHWS ESKWRSLKIQ WDEPAMIQRP ERVSPWEIKP FSASASINLI  360
QPAVKSKRPR PVYIPASETT TNSTGSAFWC HGSTKSHELA RAGSIAEVQS SESSQVVWPM  420
RQNEADAADA SPVELRTSKD VMRDQVEKGK KLEISTGCRL FGFNLTNSNS AVSGTVIAPS  480
HIDENPETFQ SPKQQKQNAS ETSTKEIKAK HGTTSSTRTR TKVQMQGIAV GRAIDLTLLK  540
GYDDLINELE KMFDIEGELR HRTKWSVVFT DNEGDMMLVG DDPWVEFCKM VRKIFIYSVD  600
EVKKINARCK FQASSLEGEG TVVSLGSEHR SET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1641235313357Auxin response factor 1
4ldw_A1e-1641235313357Auxin response factor 1
4ldw_B1e-1641235313357Auxin response factor 1
4ldx_A1e-1631235313357Auxin response factor 1
4ldx_B1e-1631235313357Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1366370KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.221011e-84boll
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017637830.10.0PREDICTED: auxin response factor 18-like
SwissprotQ9ZPY60.0ARFK_ARATH; Auxin response factor 11
TrEMBLA0A1U8NGM00.0A0A1U8NGM0_GOSHI; Auxin response factor
STRINGGorai.008G126200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27642762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.10.0auxin response factor 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]