PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0870
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 244aa    MW: 27070.3 Da    PI: 8.303
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0870genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-1768118155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr ++ +g+Wv+e+r p++   + r++lg++ tae+Aa+a++ a+++++g
  Gh_A12G0870  68 PVYRGVRMRS-WGKWVSEVRQPKK---KLRIWLGTYPTAEMAARAHDVAALAIKG 118
                  68*****998.*******999843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.1E-1268118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3069127IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-2069127IPR016177DNA-binding domain
PROSITE profilePS5103222.52469126IPR001471AP2/ERF domain
SMARTSM003802.1E-3469132IPR001471AP2/ERF domain
CDDcd000182.47E-3170128No hitNo description
PRINTSPR003673.9E-107081IPR001471AP2/ERF domain
PRINTSPR003673.9E-1092108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MERDINIEND AHYNNPLTSS SVISTTTTVA TSITFSVSGP NQNKKTSKNS VAIKGSKKAV  60
GDLERKQPVY RGVRMRSWGK WVSEVRQPKK KLRIWLGTYP TAEMAARAHD VAALAIKGCS  120
AHLNFPELAK TLPRPASTSP KEIQAAASQA AASTYLDTSR WSNNIEPEDK VSRRPRQEQV  180
PVSRSDNMCS TSPFEDDAAL FDLPDLTIDA IDRSDGFCSY SSTWQVCAVD AGFRIEEPFA  240
WEYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-14701271573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.259710.0ovule
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5814772e-68JX581477.1 Gossypium hirsutum clone NBRI_GE14121 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016709687.10.0PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ72e-61ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1U8L4Y90.0A0A1U8L4Y9_GOSHI; ethylene-responsive transcription factor ERF039-like
STRINGGorai.008G107700.11e-158(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-58ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]