PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0813
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 829aa    MW: 92125.4 Da    PI: 6.5127
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0813genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23128229199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++ ++W++++ +r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  Gh_A12G0813 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySLQPPA-QELVARDLHENEWKFRHVFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 222
                  99***********************9*****9777766.49************************************************..8899999 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++++r+
  Gh_A12G0813 223 LLGIRRA 229
                  ****997 PP

2Auxin_resp120.11.7e-39254337183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  Gh_A12G0813 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYyTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPGRWPNSHWRSVK 337
                  79*********************************989*******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-47116257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-41121243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.99E-21127228No hitNo description
PROSITE profilePS5086312.506128230IPR003340B3 DNA binding domain
SMARTSM010191.9E-24128230IPR003340B3 DNA binding domain
PfamPF023621.3E-21128229IPR003340B3 DNA binding domain
PfamPF065074.9E-34254337IPR010525Auxin response factor
SuperFamilySSF542778.5E-7719797No hitNo description
PfamPF023091.3E-5719805IPR033389AUX/IAA domain
PROSITE profilePS5174522.027723807IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MRLSSSGFNQ QTEEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKNV FLLPAEPGTP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS LQPPAQELVA RDLHENEWKF  180
RHVFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYY TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPGRWPN SHWRSVKVGW DESTAGEKQP RVSLWEIEPL  360
TTFPMYSSPF PLRLKRPWPS ALPSFHAFKD GDTNINSQMM WLQGGIGDQG LQSLNFQGFG  420
VAPWMQPRLD TSSIQGVQPD LYQAMAAAAF QEMRTVDSSK IGSQSLLQFQ QPRSMTDGSP  480
AIIQRQMLQQ SQTQNAFLQG FQENQTTSQV QLLQQLQRSN SYNNHRQQQQ QQQQQQQSQQ  540
MQQTPQFSDQ QQISNLIPAF PKASGSQAQS SSLPTAASEC QQQTFSDPLG NSLALSNASS  600
MQSILGSLSH AGASHLLNLK GSNPIISSSL LSKPVAIEPQ LSSETANYVL PQVEHLGMQG  660
MTNLKNIGNE NDSLSMPYAA SNFTSASGTD FPLNSDMTTS SCVDESGYLQ SSEYVDQVNP  720
PTGTFVKVHK LGSFGRSLDI SKFSSYNELR CELARMFGLE GQLEDPQRSG WQLVFVDREN  780
DILLLGDDPW QEFVNNVWYI KILSPLEVQQ MGKEGLNPAA SDPSQTHHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1651635847388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.205030.0boll| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437325.10.0PREDICTED: auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0D2U0G10.0A0A0D2U0G1_GOSRA; Auxin response factor
STRINGGorai.008G097200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]