PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G0813 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 829aa MW: 92125.4 Da PI: 6.5127 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.8 | 2.1e-23 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++ +r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l Gh_A12G0813 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySLQPPA-QELVARDLHENEWKFRHVFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 222 99***********************9*****9777766.49************************************************..8899999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ Gh_A12G0813 223 LLGIRRA 229 ****997 PP | |||||||
2 | Auxin_resp | 120.1 | 1.7e-39 | 254 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k Gh_A12G0813 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYyTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPGRWPNSHWRSVK 337 79*********************************989*******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.62E-47 | 116 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.5E-41 | 121 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.99E-21 | 127 | 228 | No hit | No description |
PROSITE profile | PS50863 | 12.506 | 128 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-24 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-21 | 128 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.9E-34 | 254 | 337 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 8.5E-7 | 719 | 797 | No hit | No description |
Pfam | PF02309 | 1.3E-5 | 719 | 805 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.027 | 723 | 807 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 829 aa Download sequence Send to blast |
MRLSSSGFNQ QTEEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE 60 VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKNV FLLPAEPGTP 120 SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS LQPPAQELVA RDLHENEWKF 180 RHVFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV 240 LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYY TRVSVGMRFR 300 MLFETEESSV RRYMGTITGI SDLDPGRWPN SHWRSVKVGW DESTAGEKQP RVSLWEIEPL 360 TTFPMYSSPF PLRLKRPWPS ALPSFHAFKD GDTNINSQMM WLQGGIGDQG LQSLNFQGFG 420 VAPWMQPRLD TSSIQGVQPD LYQAMAAAAF QEMRTVDSSK IGSQSLLQFQ QPRSMTDGSP 480 AIIQRQMLQQ SQTQNAFLQG FQENQTTSQV QLLQQLQRSN SYNNHRQQQQ QQQQQQQSQQ 540 MQQTPQFSDQ QQISNLIPAF PKASGSQAQS SSLPTAASEC QQQTFSDPLG NSLALSNASS 600 MQSILGSLSH AGASHLLNLK GSNPIISSSL LSKPVAIEPQ LSSETANYVL PQVEHLGMQG 660 MTNLKNIGNE NDSLSMPYAA SNFTSASGTD FPLNSDMTTS SCVDESGYLQ SSEYVDQVNP 720 PTGTFVKVHK LGSFGRSLDI SKFSSYNELR CELARMFGLE GQLEDPQRSG WQLVFVDREN 780 DILLLGDDPW QEFVNNVWYI KILSPLEVQQ MGKEGLNPAA SDPSQTHHQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-165 | 16 | 358 | 47 | 388 | Auxin response factor 5 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.20503 | 0.0 | boll| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012437325.1 | 0.0 | PREDICTED: auxin response factor 6-like isoform X2 | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A0D2U0G1 | 0.0 | A0A0D2U0G1_GOSRA; Auxin response factor | ||||
STRING | Gorai.008G097200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1344 | 28 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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