PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G0638

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 339aa MW: 35843.6 Da PI: 9.2134

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G0638	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.1e-39	63	122	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+++ Gh_A12G0638 63 TQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNTT 122 6889*****************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-26	60	119	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-32	64	120	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	66	120	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	68	104	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MIQELLGGSS GFHFGGTAGR RISITGTILD GTLASSPAPS PSTTSSSTTT TNSTASAAKS 60 DQTQNLRCPR CDSSNTKFCY YNNYNLTQPR HFCKTCRRYW TKGGALRNVP IGGGCRKNKN 120 TTTAASVSTS MGKSSAAKMK TVVSDIGRTG LGNGFDHDLQ SSPILWASPQ SSHLLALLRT 180 TPNPNANTLS TNNPVSIKEE VSLLGSHAMN EPAVANAALN ARTLGLDPLS QVPSLGLCSP 240 FWKNNQHQAQ QQHQSNNNNG SFLLGEVQNT GFQELYQRLK SSSNYYSDSS AVVLSNVGSS 300 SSSSTVLESA PVAGGELGYW NPAFSSSWSD LPTTNGAYP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX584385	7e-75	JX584385.1 Gossypium hirsutum clone NBRI_GE17677 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016720823.1	0.0	PREDICTED: dof zinc finger protein DOF5.7-like
TrEMBL	A0A1U8M586	0.0	A0A1U8M586_GOSHI; dof zinc finger protein DOF5.7-like
STRING	Gorai.008G072900.1	1e-173	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16000	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	2e-36	TARGET OF MONOPTEROS 6