PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0627
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 732aa    MW: 82999.1 Da    PI: 7.8569
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0627genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.6e-16171001099
                  HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  + + + l +p kf++++g+    s  + l+ +sg +W v+l  +k++g ++l++GW+eF +   Lk g  +vFk++g+ +f  +v +f++
  Gh_A12G0627  17 NIRDKKLEIPGKFVRKYGNG--LSNSVLLTVPSGDTWHVEL--TKSDGIVWLQNGWQEFSEYFSLKYGHLLVFKYEGNGKF--LVLIFDT 100
                  3445669**********855..7788***************..********************************998777..****997 PP
2B3536.3e-17332427195
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkl.iy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+ ++ ps+ +  + +++pk+f+ ++         +ltl +++gr+W+ ++ +y  r+k ++ ++  GW++F  +n+L++gD++vF+l++++e  l+v
  Gh_A12G0627 332 FLVTMQPSYINPGRKMCIPKNFTMKFlT-R--DLGDLTLCTSDGRTWSAQYlRYmtRNKYKKATIHIGWRQFMLDNNLEAGDVCVFELISQTEIMLKV 426
                  667788888888899********88842.2..2338***************5459888888899************************9866665555 PP

                  E CS
           B3  95 k 95 
                   
  Gh_A12G0627 427 I 427
                  5 PP
3B358.99.2e-19494593299
                  EEE-...-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   2 fkvlt.psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  fkv + p + + ++ l++p kf++++  +  e+ + +l+ ++gr+W vk+ +   ++++ +  ++  W+ F+++n+L++gD++vF+l++r+e +++v+
  Gh_A12G0627 494 FKVVMqPRYLTIRCSLSIPYKFVNQYLDE--EKEEAILRVSDGRTWVVKFAVkvvTGGQHKAEFSHRWRAFARDNNLEVGDVCVFELINRNENSFKVS 589
                  5555505555566**********999433..23479**************7776666666688999**********************9988889*** PP

                  EE-S CS
           B3  96 vfrk 99 
                  +f++
  Gh_A12G0627 590 IFSA 593
                  9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-242101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-242101IPR015300DNA-binding pseudobarrel domain
CDDcd100171.77E-19799No hitNo description
PROSITE profilePS5086314.1568101IPR003340B3 DNA binding domain
SMARTSM010193.0E-159101IPR003340B3 DNA binding domain
PfamPF023623.3E-1317100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-21324429IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-21325430IPR015300DNA-binding pseudobarrel domain
CDDcd100174.08E-20330430No hitNo description
PfamPF023622.4E-15332430IPR003340B3 DNA binding domain
PROSITE profilePS5086313.634332432IPR003340B3 DNA binding domain
SMARTSM010192.3E-11332432IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-23485592IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-22487592IPR015300DNA-binding pseudobarrel domain
CDDcd100177.68E-24492592No hitNo description
PfamPF023628.5E-17493593IPR003340B3 DNA binding domain
PROSITE profilePS5086314.522494594IPR003340B3 DNA binding domain
SMARTSM010198.7E-14494594IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MFTPKTPHFF KIILDANIRD KKLEIPGKFV RKYGNGLSNS VLLTVPSGDT WHVELTKSDG  60
IVWLQNGWQE FSEYFSLKYG HLLVFKYEGN GKFLVLIFDT SASEIEYPCK SHIEDQKSDD  120
QMCLKLVKEE PKDDVCDKPL YGTPSCKETK RKKSRPLCSN TEYLCKSYIE DPKSDDQLCL  180
KPVKEEAKDG VYDETLYETP PCKKARRNKS QSQCSKVEYP CKNHIEDNKS EDQVSLKPVK  240
EEAKDDVCDK TLYETPPCKE TRKKKPQSQC SKPRKKLKTA QKDKNRKDRE DASTDEEGLK  300
TKVPRDGRAF GAIEYDKALQ RAFSFESENP FFLVTMQPSY INPGRKMCIP KNFTMKFLTR  360
DLGDLTLCTS DGRTWSAQYL RYMTRNKYKK ATIHIGWRQF MLDNNLEAGD VCVFELISQT  420
EIMLKVIIYR VHQDASCSSP LGGINSLEIG DNVSSSIPGS TESKHHCSIR PLTPHEKARA  480
IQKASNFKSK NPFFKVVMQP RYLTIRCSLS IPYKFVNQYL DEEKEEAILR VSDGRTWVVK  540
FAVKVVTGGQ HKAEFSHRWR AFARDNNLEV GDVCVFELIN RNENSFKVSI FSAAPGANSS  600
VSPQAHDVKA SQVASKNCSV PKIEADDEFG NCYAGNPGPA AQPTTIGLQD NEEEVNPTDD  660
AIASQVASKD FLVPKVEVDD DFGKCHAGNF SPAAQITTTG YQEAEEEVKP SKYISNVLEH  720
KQLEYMNLSK FI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1830859125144B3 domain-containing transcription factor VRN1
4i1k_B4e-1830859125144B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272278PRKKLKT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6167626e-68JX616762.1 Gossypium hirsutum clone NBRI_GE61640 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016711921.10.0PREDICTED: uncharacterized protein LOC107925711 isoform X1
TrEMBLA0A1U8LBD90.0A0A1U8LBD9_GOSHI; uncharacterized protein LOC107925711 isoform X1
STRINGGorai.008G071200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16925512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-29B3 family protein