PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0624
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 807aa    MW: 87764.4 Da    PI: 7.2124
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0624genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.13.5e-095736101954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yps +++  LA+++gL+++qV++WF N R +
  Gh_A12G0624 573 FEHflHPYPSDADKLLLARQTGLSKNQVSNWFINARVR 610
                  664459******************************88 PP
2BELL94.21.1e-304435041072
         BELL  10 akLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  ++Llsl   Vd+rY++y+eq+qtv++sF+ v+g g+a pYt+lA ka+SrhF+cLkdai+ q+
  Gh_A12G0624 443 SHLLSL-SIVDRRYNHYCEQMQTVVNSFDLVMGFGAAVPYTALAKKAMSRHFKCLKDAITAQL 504
                  578886.68***************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-71351502IPR006563POX domain
PfamPF075261.8E-48356501IPR006563POX domain
PROSITE profilePS5007112.584551614IPR001356Homeobox domain
CDDcd000865.79E-13554615No hitNo description
SMARTSM003896.6E-10554618IPR001356Homeobox domain
SuperFamilySSF466896.42E-17556621IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-28557620IPR009057Homeodomain-like
PfamPF059201.3E-17571610IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MGIATSPVTP SILHQIPFQE KSNHSTNSMS QDYHHQAAAG IFSFSNGFER SAMSHQEQHQ  60
HQQQQQQHLV QKIRRDKQRV QGFEPPSLPL VGIESNALPV YEAEGMLSEM FDFPTGVAAS  120
AELLDQHVEP NYRAHRPPSN SNEWFSNRRG VVGGLGLVGE SKNHDNRDTL AAQQQHQQLP  180
SINADSAAAM NLFLMNPQPR SPSPPAPPSS SSNTLHMLLP NPSTSLQGFN VSGPAGGTFR  240
TTSTVLSPPQ FTWVPNSAHE ADDTGSQLNN SSQIGGVIEG QGLSLSLSSS LLHLEAAKAE  300
ELRMYYNQEA GSSSAAAAQF HYKNLATHNH HNLQGGVGEN HQVHVGFGSS LGMVNVIRNS  360
KYVKAAQQLL EEFCSVGRGN FKRNKSGRNN TNPTFNLPGS NGDGGSSSST KDPPPLSTAD  420
RIEHQRRKVK LLSMLDEACN LFSHLLSLSI VDRRYNHYCE QMQTVVNSFD LVMGFGAAVP  480
YTALAKKAMS RHFKCLKDAI TAQLKHSCEA LGEKDGAGNS GITKGETPRL RVLEQSLRQQ  540
RAFHQMGMVE QEAWRPQRGL PERSVNILRA WLFEHFLHPY PSDADKLLLA RQTGLSKNQV  600
SNWFINARVR LWKPMVEDMY QQEIKEEDED NNEGHNSNSA QKSTPSTTAG AAASTPSEPP  660
PTTAAAGGKR SEINAMENDP SLIAINRQGF SENQAKQCTH HDTSATNTTI IATGPPPPTT  720
FKATATEVAP PFSYGVDGTT TCRRGSNVSA DYGTTTRPGN DSDIGSTLIR FGTTTGDVSL  780
TLGLRHAGNM PENTSSFSVR DVGGLLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-16560617158Homeobox protein Meis1
4xrs_B3e-16560617158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.233660.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016711842.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_016711849.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_016711855.10.0PREDICTED: BEL1-like homeodomain protein 4
TrEMBLA0A1U8LFB70.0A0A1U8LFB7_GOSHI; BEL1-like homeodomain protein 4
STRINGGorai.008G070800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-155BEL1-like homeodomain 2