PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G0519 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GeBP | ||||||||
Protein Properties | Length: 275aa MW: 31380 Da PI: 10.449 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 74.9 | 1.4e-23 | 59 | 151 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +fqr+wse Dei +Lq+l+ + s +d+ fy+ +++s+s ++ksql+eK+rrL+kKf+ +++ ++g +ps + hd+ f+lsk++W Gh_A12G0519 59 KFQRIWSEPDEIRFLQALLRS---HPLSFPKDLPLFYSSFSHSMSQPYTKSQLSEKLRRLRKKFRVVSSRLARGLNPSSLSLHDRALFDLSKRLWS 151 79*****************87...5667788****************************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.2E-26 | 60 | 151 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MDSSQPHPSK PSASKLPIKR KAPHHPQFFT PKLEYQPIIL PPPKPKPKPK PQPQTPPFKF 60 QRIWSEPDEI RFLQALLRSH PLSFPKDLPL FYSSFSHSMS QPYTKSQLSE KLRRLRKKFR 120 VVSSRLARGL NPSSLSLHDR ALFDLSKRLW SPEFASSSPF GKNSSGFNGV AGNGFDDCDT 180 IDDDGEVKIN GVSLHYDFAA GRDEVTSRET IDGVLAKGVL NAFDECLKEV RMMFMKPGVV 240 CMDTTERKWK EQRVSEFDVL GRRLRLVIEN SLTRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.3057 | 0.0 | boll| ovule |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX578058 | 0.0 | JX578058.1 Gossypium hirsutum clone NBRI_GE9999 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016701583.1 | 0.0 | PREDICTED: sorbin and SH3 domain-containing protein 2-like | ||||
Refseq | XP_016701584.1 | 0.0 | PREDICTED: sorbin and SH3 domain-containing protein 2-like | ||||
TrEMBL | A0A1U8KLI5 | 0.0 | A0A1U8KLI5_GOSHI; sorbin and SH3 domain-containing protein 2-like | ||||
STRING | Gorai.008G058900.1 | 1e-165 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18042 | 8 | 9 |