PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0509
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YC
Protein Properties Length: 195aa    MW: 22806.3 Da    PI: 6.4337
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0509genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC125.12.6e-3955153298
        NF-YC   2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  l+ fw +q   i + + fk +h+lPlarik+i+k+d+d  misa++P+l+skacelfileltlr+wlh+ee kr tl+++d+++a+ + +   fl d+
  Gh_A12G0509  55 LELFWYQQmleIHNISAFKsHHQLPLARIKRIMKSDKD--MISADTPILFSKACELFILELTLRAWLHTEEDKRGTLQRCDVSKAIRQEEALHFLFDV 150
                  789****966667778899889*************998..9********************************************************* PP

        NF-YC  96 vpr 98 
                  vp 
  Gh_A12G0509 151 VPL 153
                  *96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-2873139IPR009072Histone-fold
SuperFamilySSF471139.22E-2374155IPR009072Histone-fold
PfamPF008085.0E-1677138IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDLNQSMEFT PSATSSPQIH NFMPMTSFML PFHQPSNEDG EEVKQSHLLV QKRSLELFWY  60
QQMLEIHNIS AFKSHHQLPL ARIKRIMKSD KDMISADTPI LFSKACELFI LELTLRAWLH  120
TEEDKRGTLQ RCDVSKAIRQ EEALHFLFDV VPLINHKDDD GKFLEENEHH PVNQPQFPLL  180
DMNAVRIRMS SKIII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-3062152394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016713609.11e-133PREDICTED: nuclear transcription factor Y subunit C-3-like isoform X1
SwissprotQ8LCG77e-35NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A1U8LK941e-132A0A1U8LK94_GOSHI; nuclear transcription factor Y subunit C-3-like isoform X1
STRINGGorai.008G057500.11e-130(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1809079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-37nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  3. Mei X, et al.
    Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
    Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
    [PMID:25851237]
  4. Baud S, et al.
    Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
    Plant Physiol., 2016. 171(2): p. 1099-112
    [PMID:27208266]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]