PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G0509

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YC

Protein Properties

Length: 195aa MW: 22806.3 Da PI: 6.4337

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G0509	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	125.1	2.6e-39	55	153	2	98
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 l+ fw +q i + + fk +h+lPlarik+i+k+d+d misa++P+l+skacelfileltlr+wlh+ee kr tl+++d+++a+ + + fl d+ Gh_A12G0509 55 LELFWYQQmleIHNISAFKsHHQLPLARIKRIMKSDKD--MISADTPILFSKACELFILELTLRAWLHTEEDKRGTLQRCDVSKAIRQEEALHFLFDV 150 789**966667778899889*********998..9******************************************************* PP NF-YC 96 vpr 98 vp Gh_A12G0509 151 VPL 153 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.5E-28	73	139	IPR009072	Histone-fold
SuperFamily	SSF47113	9.22E-23	74	155	IPR009072	Histone-fold
Pfam	PF00808	5.0E-16	77	138	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MDLNQSMEFT PSATSSPQIH NFMPMTSFML PFHQPSNEDG EEVKQSHLLV QKRSLELFWY 60 QQMLEIHNIS AFKSHHQLPL ARIKRIMKSD KDMISADTPI LFSKACELFI LELTLRAWLH 120 TEEDKRGTLQ RCDVSKAIRQ EEALHFLFDV VPLINHKDDD GKFLEENEHH PVNQPQFPLL 180 DMNAVRIRMS SKIII

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	5e-30	62	152	3	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016713609.1	1e-133	PREDICTED: nuclear transcription factor Y subunit C-3-like isoform X1
Swissprot	Q8LCG7	7e-35	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A0A1U8LK94	1e-132	A0A1U8LK94_GOSHI; nuclear transcription factor Y subunit C-3-like isoform X1
STRING	Gorai.008G057500.1	1e-130	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18090	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	3e-37	nuclear factor Y, subunit C2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]