PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0390
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 684aa    MW: 75443.8 Da    PI: 5.6416
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0390genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.93.9e-094244611954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LA+++gLt +qV +WF N R +
  Gh_A12G0390 424 FEHflHPYPKDSDKIMLARQTGLTRSQVANWFINARVR 461
                  664459******************************88 PP
2BELL118.82.5e-38282357172
         BELL   1 erqelqkkkakLlsllee....VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  e+qelq+k +kLls+l+e    Vd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai +q+
  Gh_A12G0390 282 EKQELQSKLTKLLSMLDEfllqVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAINGQV 357
                  689*************9666669**************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.7E-59205355IPR006563POX domain
PfamPF075262.0E-49211353IPR006563POX domain
PROSITE profilePS5007112.082402465IPR001356Homeobox domain
SMARTSM003891.7E-9405469IPR001356Homeobox domain
CDDcd000861.09E-12405466No hitNo description
SuperFamilySSF466895.56E-17406472IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-28408471IPR009057Homeodomain-like
PfamPF059201.3E-17422461IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MATYDTGSDN QKDTAPMIYF RESMPGSFPE APDLPGNAIM YMNSGSYLDA FAGNSQQQNN  60
CVEILAVEAS DSTPQQQEIL SNLGGSRVGD FGTWRDGRNE ILVMHPMDGT ASILRNGQNL  120
QGQGLSLSLG TQIPSGIQMT SIPYRNPNST FASFLSPNPT LTGEGGSRTS SCRDEQSRNV  180
EYVPPGFSGG NQNSNKGDLS AYGMSSTSRT IPNSKYLKAV QQLLDEVVNV RMALKQCNGE  240
KNQSSEDNQM KSSKEDDGGS KKMPSNQQEF SNNSPNHLSH AEKQELQSKL TKLLSMLDEF  300
LLQVDRRYKQ YYHQMQIVVS SFDVIAGCGA AKPYTALALQ TISRHFRCLR DAINGQVRAT  360
RKSLGEQDTS ENGKGVGITR LRYVDQQLRQ QRALQQLGMM QQHAWRPQRG LPESSVSILR  420
AWLFEHFLHP YPKDSDKIML ARQTGLTRSQ VANWFINARV RLWKPMVEEM YKEEFADAEM  480
DSNSSSENVV KATKGDTRTS EDRGEDVQQS ESSLAIERSD TRQLVDSKPN PVPSLVDMEG  540
PVTGAGFQYF TRGEAETEHM LLKLREEQRP NIDDSNLFPN AISHPDGDSD RIMAVAAAYQ  600
MSGFGNFGNR SSVSLTLGLQ HCEGGNIPIS GGGHQDFVAM RGADICNPTA SSVGASETSD  660
FECINPGNRQ HGFSSSHLLH DFVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A5e-16411468158Homeobox protein Meis1
4xrs_B5e-16411468158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016714723.10.0PREDICTED: BEL1-like homeodomain protein 6
TrEMBLA0A1U8LMM30.0A0A1U8LMM3_GOSHI; BEL1-like homeodomain protein 6
STRINGGorai.008G031100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-138BEL1-like homeodomain 6