PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0337
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 602aa    MW: 68014.1 Da    PI: 5.1576
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0337genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-11341384755
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   +Er+RR+++N+++  Lr+l+Pk +      Kl+ a+iL  A+e++k+L+
  Gh_A12G0337 341 VAERKRRKKLNERLYSLRSLVPKiS------KLDRASILGDAIEFVKELE 384
                  68*********************66......****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.3E-217153IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.77334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.27E-11336388No hitNo description
SuperFamilySSF474591.31E-15338397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-14340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15341397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-9341384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.0017484547No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MNIFQNLMER LRQVVGPKGW DYCVLWKLSD DQRFLEWVDC CCGGAESIES SGELQFPVTT  60
VLPCRDVMFQ HPKTRSCELL AQLPSCMPLD SGSHAQALIS NQPKWFNFSN NSDPNVLEEI  120
VGTRILIPVA EGLIELFVAK QVCEDQNVMD YIVTLCNISL EQSSMMNSSC MDTHFTALNA  180
QALNEFQAKT HLSNENDRKD PIINHFQPPL TTTLETLNLP YDISIDQIRS TNTLQQYHYL  240
SDDKNRKNMD VCVEGSHEVF LSDKVVNPLK SSVDNGLQEM DPLNSMVTNE SMVIQGNEKD  300
SIKQENGRSD SISDCSDQND DEDDARYQRR AGSKGQSKNL VAERKRRKKL NERLYSLRSL  360
VPKISKLDRA SILGDAIEFV KELENQKKEL QDELEEHSDN DNGAKKTGMN GVHKKFQSEI  420
FLQNDQIPVY FNPEHDKGPN GFPVGGNGSV SRAQNQEVDT CADKTQQMEV QVEVAQIDGN  480
QFFVKVFSEH KPGGFVRLME ALDSLGLEVT NANVNSFRGL VSNVFKVEKK DSEMVQADHV  540
RESLLELTRT PSKGLSEMVK ASETNNGNGV ECNYHNQQQH LHNQRITSHH HQLHHFPPKQ  600
AA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342349ERKRRKKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6228414e-96JX622841.1 Gossypium hirsutum clone NBRI_GE69754 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016719941.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X1
TrEMBLA0A1U8LZF00.0A0A1U8LZF0_GOSHI; transcription factor ABORTED MICROSPORES-like isoform X1
STRINGGorai.008G036900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-137bHLH family protein