PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0146
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 314aa    MW: 33522.1 Da    PI: 5.2475
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0146genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.47e-17224260135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg+
  Gh_A12G0146 224 CTHCGISSkrTPMMRRGPAGPRTLCNACGLKWANKGV 260
                  *****9999*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.76384119IPR010399Tify domain
SMARTSM009793.4E-1184119IPR010399Tify domain
PfamPF062001.9E-1288118IPR010399Tify domain
PfamPF062038.6E-16151193IPR010402CCT domain
PROSITE profilePS5101712.6151193IPR010402CCT domain
SMARTSM004012.3E-9218272IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.827218274IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-12221271No hitNo description
Gene3DG3DSA:3.30.50.103.6E-15223265IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.1E-14224260IPR000679Zinc finger, GATA-type
PROSITE patternPS003440224251IPR000679Zinc finger, GATA-type
CDDcd002021.23E-14224273No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MANSNHQPTP MYGSGAANMQ RNIDEEEDDD VPGGAGGRGE ESVDNPQIGF QENGAVVAVM  60
NNGMDEASHA HVYGQGSDST SAPGNGGADQ LTLSFQGEVY VFDSVSPDKV QAVLLLLGGY  120
EIPSGIPAMG TVSVTQRGLN DFPGRSIQPQ RAASLNRFWE KRKERCFEKK IRYTVRKEVA  180
LRMQRKKGQF TSSKAISEEV ASASSGWSGT RGSGQDENMQ EVLCTHCGIS SKRTPMMRRG  240
PAGPRTLCNA CGLKWANKGV LRDLSKVSTV VIPDPTVKTA EQSDAEANES EAVTVTTDVV  300
SSSNGDNSTV TAER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017637329.10.0PREDICTED: GATA transcription factor 24-like isoform X1
RefseqXP_017637330.10.0PREDICTED: GATA transcription factor 24-like isoform X1
RefseqXP_017637331.10.0PREDICTED: GATA transcription factor 24-like isoform X1
RefseqXP_017637332.10.0PREDICTED: GATA transcription factor 24-like isoform X1
SwissprotQ8H1G02e-76GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A0B0MJ710.0A0A0B0MJ71_GOSAR; GATA transcription factor 24-like protein
STRINGGorai.008G017800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.27e-79ZIM-like 1