PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0062
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 352aa    MW: 39496.9 Da    PI: 6.3868
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0062genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61.1e-071154239
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                 + r C+ +++ ++ l+C+ ++  lC +C  e H+       H++
  Gh_A12G0062 11 QGRLCDYCNQSKALLYCRADSAKLCFSCDREVHSAnqlfskHSR 54
                 6789******99*********************65777777776 PP
2zf-B_box301.1e-095499242
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvpl 42
                 + + C+ ++  ++++fCe+ q+ +C +C  e+Hk      H+++p+
  Gh_A12G0062 54 RSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFsssslHNRRPI 99
                 5689*****************************8899999998886 PP
3CCT65.61.5e-22308350143
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                  R+ a++RYkeKrktR+F+K+irYesRK++AesR R+KGrF+k 
  Gh_A12G0062 308 RDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKV 350
                  899**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.9E-141057IPR000315B-box-type zinc finger
PROSITE profilePS5011911.2061057IPR000315B-box-type zinc finger
PfamPF006432.3E-61155IPR000315B-box-type zinc finger
CDDcd000211.29E-61357No hitNo description
PROSITE profilePS5011910.5095399IPR000315B-box-type zinc finger
PfamPF006432.6E-75599IPR000315B-box-type zinc finger
CDDcd000211.02E-55799No hitNo description
SMARTSM003360.195899IPR000315B-box-type zinc finger
PfamPF062035.2E-17308350IPR010402CCT domain
PROSITE profilePS5101715.12308350IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MTDQRRSNQK QGRLCDYCNQ SKALLYCRAD SAKLCFSCDR EVHSANQLFS KHSRSQLCDA  60
CDGSPASIFC ETEQSVFCSN CDWESHKFSS SSLHNRRPIE GFTGCPSVNE LVSIVGIEDL  120
GEKKGGDDCG YDDGWLDLLS WENPVISSFD DLLVSSDSDH GFKPTDVLPL PKNRNANCGQ  180
HKEEVLHQLR ELAKSEPILS FDNTGDLQTG TVHTSCTNDT APIPFPAYES SALRFFGDNV  240
EMTDQVFVPF SELRGHTEEC AVVPDKHLGS SRTIPVSDSL GNQQHQIDTG TVSALPKVAV  300
HELNSQERDS AISRYKEKRK TRRFDKHIRY ESRKVRAESR TRIKGRFAKV EH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.34300.0boll| ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738631930.0
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016717167.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
SwissprotO822561e-102COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A1U8LRG40.0A0A1U8LRG4_GOSHI; zinc finger protein CONSTANS-LIKE 13-like
STRINGGorai.008G008400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-97B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]