PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A11G2982 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 340aa MW: 37578.2 Da PI: 7.5054 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.4 | 1.9e-14 | 103 | 147 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky Gh_A11G2982 103 PWTEEEHKLFLVGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 147 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.1 | 96 | 152 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.11E-17 | 98 | 153 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-16 | 99 | 150 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.4E-10 | 100 | 150 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-11 | 102 | 147 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.61E-9 | 103 | 148 | No hit | No description |
Pfam | PF00249 | 1.2E-11 | 103 | 147 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 340 aa Download sequence Send to blast |
MGMPPATCAS ASSSSIVNSS PIGGAGGGGG EIMLFGVRVV VDSMRKSVSM NNLSQYEQPH 60 ESNKHNNKSN KDQGDDNLTA GYASADDAVP HSSGNRERKR GVPWTEEEHK LFLVGLQKVG 120 KGDWRGISRN FVKTRTPTQV ASHAQKYFLR RSNLNRRRRR SSLFDITTDT VQAIPMEEER 180 IDRQENSTQP SETNVFPIMP AAFPMAFNQV VPPVPIQNPT ENLTIAQGNQ LNNNVPTANL 240 IRPVPNFPAL QRSDLNTDLN PATDPLSLSL KLSLQSDQMD SSSSSTSRHS PFQERRMVFI 300 FFFCGGFIFL HQWIELKTEM GGCPVLSCSD CPDDMQGQCF |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.1098 | 0.0 | boll| ovule| root| stem |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00631 | PBM | Transfer from PK23829.1 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HQ525016 | 3e-52 | HQ525016.1 Gossypium herbaceum clone NBRI_E_415 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017620108.1 | 1e-167 | PREDICTED: transcription factor MYB1R1-like | ||||
Swissprot | Q2V9B0 | 9e-71 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | A0A2P5X9E5 | 0.0 | A0A2P5X9E5_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G034000.1 | 1e-174 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2461 | 26 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G74840.1 | 3e-61 | MYB_related family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|