PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G2956 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 235aa MW: 27213.3 Da PI: 5.172 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.7 | 4.3e-08 | 151 | 199 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +Er RR +iN+++ L++++P + + + a +L + ++Y++ Lq Gh_A11G2956 151 NSHCVAERVRRGKINERLRSLQDIVPGC----YRNMGMAVMLDEIINYVQFLQ 199 5899***********************8....466888999999999999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.06E-10 | 146 | 203 | No hit | No description |
SuperFamily | SSF47459 | 3.14E-16 | 146 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.843 | 148 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-15 | 149 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-5 | 151 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-7 | 154 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MADFTFLDID PTMELLDQFP ELKSLNYQSF SPFSTTDNNL FNNQAQNIPT INNRREEDNN 60 LPDFTHNSVP SVSQPIFRPG NEFHEETHKR KELDFAWETS FWNSSSPHVY ETEINIRNNP 120 GRGNRAKNNG KEEDKPKEVV HVRARRGQAT NSHCVAERVR RGKINERLRS LQDIVPGCYR 180 NMGMAVMLDE IINYVQFLQN QIEFLSMKLT AASACYDFNS DSDDMETMQV LKLIS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017610693.1 | 1e-175 | PREDICTED: transcription factor BEE 3-like isoform X1 | ||||
Swissprot | Q8GWK7 | 2e-50 | BEE3_ARATH; Transcription factor BEE 3 | ||||
TrEMBL | A0A0D2T6R1 | 1e-163 | A0A0D2T6R1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G005700.1 | 1e-164 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM28200 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73830.1 | 2e-50 | BR enhanced expression 3 |
Publications ? help Back to Top | |||
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