PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G2918

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 634aa MW: 72739.5 Da PI: 6.7535

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G2918	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	385.1	8.4e-118	260	632	1	374
GRAS 1 lvelLlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++lL++cA+av++g+ + +++lL+++++++sp gd +qRla+y++eAL+arla+++s++yk+l +++ts + ++a+ l++ ++P+ k+sh++ Gh_A11G2918 260 LRTLLITCAQAVAAGERNgTTSELLKQIRQHSSPFGDGNQRLAHYLAEALEARLAGTGSHIYKSLVSKRTS---AYDIMKAYLLYVAACPFRKVSHFI 354 6789********99987899****************************************99999...899***************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 +N+ I a ++ r+H+iDf+i +G+QWp+L++ L+ R+egpp+lRiTg++ p++g +e++eetg+rLa +Aee++vpf++++ +ak++e++++ee Gh_A11G2918 355 CNKSINVASRKSMRLHVIDFGILYGFQWPTLIERLSLRREGPPKLRITGIDFPQPGfkPAERVEETGRRLAAYAEEFKVPFQYKA-IAKKWETVRVEE 451 ***************************************************999***********************.7******* PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 L+++++E ++Vn+ ++ ++llde+v+++s+r+ vL+l+++++P+++++ + +n++ F++rf eal ++s++fd+l+a +pre+ er+ +Ere+lg Gh_A11G2918 452 LEIEEDEFVVVNCLYRAKNLLDETVAVHSPRNLVLNLIRKINPNLFIHGIINGAYNAPFFVTRFREALFHFSSMFDMLDAIVPREDWERMLIEREILG 549 ********************************************************************************************** PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 re+ n++ace er+er et+++W++r+ +aGF + p++ +++k+a +++++ + + ++e++ +lv+gWk+r ++++SaW+ Gh_A11G2918 550 REALNAIACESWERVERPETVKQWHARILRAGFLQQPFEREIVKEAFERVQTFYHKDFVIDEDNRWLVQGWKGRIIYALSAWK 632 **************************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.066	234	612	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-115	260	632	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence Send to blast
MDPRFKGFSV FQKQNFKEFH YHPSEQPASS LRHEEDLSED CDFSDSILRY INDILMEEDM 60 EDKSCMLQES LDLQAAEKSF YDVLGKKYPP SPEHNSSSFG DINGDMLQNQ TQSLNVSSIS 120 QSSYSSSSMV NLDGMLESPN STLQVPESIW QFNKGVEEAS KFIPSNVDLF GNFESYSKGR 180 KFSNRDDVTD EDERSSKQVA VCSETSVRSE MLDMVLLCSS GKPPTRFTAL RESLRDGISR 240 KVQQKGRGKN QSGKKEVVDL RTLLITCAQA VAAGERNGTT SELLKQIRQH SSPFGDGNQR 300 LAHYLAEALE ARLAGTGSHI YKSLVSKRTS AYDIMKAYLL YVAACPFRKV SHFICNKSIN 360 VASRKSMRLH VIDFGILYGF QWPTLIERLS LRREGPPKLR ITGIDFPQPG FKPAERVEET 420 GRRLAAYAEE FKVPFQYKAI AKKWETVRVE ELEIEEDEFV VVNCLYRAKN LLDETVAVHS 480 PRNLVLNLIR KINPNLFIHG IINGAYNAPF FVTRFREALF HFSSMFDMLD AIVPREDWER 540 MLIEREILGR EALNAIACES WERVERPETV KQWHARILRA GFLQQPFERE IVKEAFERVQ 600 TFYHKDFVID EDNRWLVQGW KGRIIYALSA WKPG

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence Send to blast

MDPRFKGFSV FQKQNFKEFH YHPSEQPASS LRHEEDLSED CDFSDSILRY INDILMEEDM  60
EDKSCMLQES LDLQAAEKSF YDVLGKKYPP SPEHNSSSFG DINGDMLQNQ TQSLNVSSIS  120
QSSYSSSSMV NLDGMLESPN STLQVPESIW QFNKGVEEAS KFIPSNVDLF GNFESYSKGR  180
KFSNRDDVTD EDERSSKQVA VCSETSVRSE MLDMVLLCSS GKPPTRFTAL RESLRDGISR  240
KVQQKGRGKN QSGKKEVVDL RTLLITCAQA VAAGERNGTT SELLKQIRQH SSPFGDGNQR  300
LAHYLAEALE ARLAGTGSHI YKSLVSKRTS AYDIMKAYLL YVAACPFRKV SHFICNKSIN  360
VASRKSMRLH VIDFGILYGF QWPTLIERLS LRREGPPKLR ITGIDFPQPG FKPAERVEET  420
GRRLAAYAEE FKVPFQYKAI AKKWETVRVE ELEIEEDEFV VVNCLYRAKN LLDETVAVHS  480
PRNLVLNLIR KINPNLFIHG IINGAYNAPF FVTRFREALF HFSSMFDMLD AIVPREDWER  540
MLIEREILGR EALNAIACES WERVERPETV KQWHARILRA GFLQQPFERE IVKEAFERVQ  600
TFYHKDFVID EDNRWLVQGW KGRIIYALSA WKPG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-45	267	633	26	380	Protein SCARECROW
5b3h_A	6e-45	267	633	25	379	Protein SCARECROW
5b3h_D	6e-45	267	633	25	379	Protein SCARECROW
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX577878	1e-166	JX577878.1 Gossypium hirsutum clone NBRI_GE9783 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017627452.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A2P5XEV7	0.0	A0A2P5XEV7_GOSBA; Uncharacterized protein
STRING	Gorai.007G376400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein