PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G2828
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YA
Protein Properties Length: 314aa    MW: 34184.5 Da    PI: 9.8888
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G2828genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.62.7e-30160215258
    CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   p+YVNaKQy++I++RRq+Rak+  ++kl +k+rkpy+h SRh hA+rRpRg+gGrF
  Gh_A11G2828 160 GPIYVNAKQYKGIMRRRQSRAKAVLQNKL-TKARKPYMHYSRHLHAMRRPRGCGGRF 215
                  69***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-34157218IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.454158218IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.7E-26161215IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.4E-21161183IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.4E-21192215IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MQTLHLKEHG GIGNQPMGQL ASTPPSSLPT LPWCSVLGSH QSLHGGEAFG AQLKPFLMEH  60
PSNGDQVFSS KQLNKGNTAQ FTIFPGDCKN SGDEQNKPQA VTSLQSDPSE NRARFELGFG  120
QHMACAKYPY MDQLYGVFST YGAQISGRVM LPLNMASEEG PIYVNAKQYK GIMRRRQSRA  180
KAVLQNKLTK ARKPYMHYSR HLHAMRRPRG CGGRFLNTRG SGSDKDDTAT RKATQGLISN  240
RSCSSDSGTL NSSKGPTHSG ASEVTSIYSR GDLDHHFLID HLGLSVHSIS SMINNQRGGT  300
VTVATADNCC NLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A1e-16159216260HAPB protein
4g92_A1e-16159216260HAPB protein
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5836293e-34JX583629.1 Gossypium hirsutum clone NBRI_GE16721 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017629596.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like
TrEMBLA0A2P5XMG70.0A0A2P5XMG7_GOSBA; Uncharacterized protein
STRINGGorai.007G363800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.24e-48nuclear factor Y, subunit A10