PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G2808
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 361aa    MW: 39771.3 Da    PI: 6.2528
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G2808genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08199246455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  Gh_A11G2808 199 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 246
                  8*************************9....888999999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-15193264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-8193250No hitNo description
Gene3DG3DSA:4.10.280.101.5E-14195263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.519195245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-6199246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-8201251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MESNAGTLET RSNRTALERE EVAALESLQF TDEIHRLMSA PATDNASSFT ALLELPAPQA  60
VQLIHSPDSA KLIATPAPNV EDFKGGFHFP SNGGLIERAA RFSVFAGEGK NKSDSPEATS  120
NNSSANLQKA VKSEPAETES SQPLISDPTV ENRGIKRKDR EKVKGQTKKS KTTAKESSDD  180
AEKLPYVHVR ARRGQATDSH SLAERARREK INARMKLLQE LVPGCNKISG TALVLDEIIN  240
HVQSLQRQVE FLSMTLAAVN PRIDFNFDSV FTAESGSLMD SNFSGMVMPV MWPEVQLNSN  300
RQQYPQQLHF DAFQQPVWGR EEVCNNYLTP ENSLLSYDSS ANSGHPFGNT PRLNTCVNST  360
H
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.15430.0boll| embryo| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016710506.10.0PREDICTED: transcription factor bHLH48-like
SwissprotQ3EAI14e-94BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A1L2DTH80.0A0A1L2DTH8_GOSHI; Basic helix-loop-helix protein
STRINGEOY094030.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-104bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]