PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G2752 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 25611.1 Da PI: 6.4152 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.3 | 4.8e-12 | 69 | 121 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +h++ Er RR+++N+ ++ Lr++lP++ ++ k+ls +++ + +Y+ +Lq Gh_A11G2752 69 KKLNHSASERVRRRKMNDLYSSLRSMLPPS--EQTKRLSIPATVSRMLKYMPELQ 121 6789*************************7..36666********9999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.15E-12 | 67 | 125 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-13 | 67 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.687 | 68 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.0E-10 | 68 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-9 | 69 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-7 | 74 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MCALFPVCEW PLDAPIGHQH IISGALAGFE SFDDFHHFTF HDDMPRIQLN RPMLSAGDTG 60 DENPTTVDKK LNHSASERVR RRKMNDLYSS LRSMLPPSEQ TKRLSIPATV SRMLKYMPEL 120 QSQVEILLQK KQQILSTICK QDDHDLINQH HQNKTKLSDG FKVSPFTVSG TKVSDTEATI 180 QISTVGPTSQ GIPPLSPILY GLEEDGLFLT DASCFESFGG RVFYNLNF |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX582021 | 1e-84 | JX582021.1 Gossypium hirsutum clone NBRI_GE14786 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017630090.1 | 1e-167 | PREDICTED: transcription factor ORG2-like | ||||
TrEMBL | A0A2P5W836 | 1e-166 | A0A2P5W836_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G353000.1 | 1e-160 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM482 | 28 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 4e-41 | bHLH family protein |